Evidence map›Paper›PMID 27273345›Full record

ArticleAngewandte Chemie (International ed. in English)2016

Cross-Platform DNA Encoding for Single-Cell Imaging of Gene Expression.

Pavel Zrazhevskiy, Shreeram Akilesh, Wanyi Tai, Konstantin Queitsch, Lawrence D True, Jonathan Fromm, David Wu, Peter Nelson, John A Stamatoyannopoulos, Xiaohu Gao

Abstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Pavel ZrazhevskiyDepartment of Bioengineering, University of Washington, Seattle, WA, 98195, USA.
Shreeram AkileshDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Wanyi TaiDepartment of Bioengineering, University of Washington, Seattle, WA, 98195, USA.
Konstantin QueitschDepartment of Genome Sciences, University of Washington, Seattle, WA, 98195, USA.
Lawrence D TrueDepartment of Pathology, University of Washington, Seattle, WA, 98195, USA.
Jonathan FrommDepartment of Laboratory Medicine, University of Washington, Seattle, WA, 98195, USA.
David WuDepartment of Laboratory Medicine, University of Washington, Seattle, WA, 98195, USA.
Peter NelsonDepartment of Medicine, University of Washington, Seattle, WA, 98195, USA.
John A StamatoyannopoulosDepartment of Genome Sciences, University of Washington, Seattle, WA, 98195, USA.
Xiaohu GaoDepartment of Bioengineering, University of Washington, Seattle, WA, 98195, USA. xgao@uw.edu.

Funding

Sensitive and multiplexed analysis of cancer biomarkers with QD barcodesR01CA131797 · NCI · UNIVERSITY OF WASHINGTON · PI GAO, XIAOHU · 2008 to 2012
$1.6M
Nanotechnology and Physical Science Training Program in Cancer ResearchT32CA138312 · NCI · UNIVERSITY OF WASHINGTON · PI ZHANG, MIQIN · 2009 to 2013
$1.5M
Cancer molecular analysis using quantum dotsR21CA192985 · NCI · UNIVERSITY OF WASHINGTON · PI GAO, XIAOHU · 2015 to 2017
$672k
NCI NIH HHS R01 CA131797NCI NIH HHS R21 CA192985NCI NIH HHS T32 CA138312
6 · The paper itself

Abstract

Integration of imaging data across different molecular target types can provide in-depth insight into cell physiology and pathology, but remains challenging owing to poor compatibility between target-type-specific labeling methods. We show that cross-platform imaging analysis can be readily achieved through DNA encoding of molecular targets, which translates the molecular identity of various target types into a uniform in situ array of ssDNA tags for subsequent labeling with complementary imaging probes. The concept was demonstrated through multiplexed imaging of mRNAs and their corresponding proteins with multicolor quantum dots. The results reveal heterogeneity of cell transfection with siRNA and outline disparity in RNA interference (RNAi) kinetics at the level of both the mRNA and the encoded protein.

Indexed as

Single-Cell AnalysisDNAFluorescent DyesGene ExpressionHeLa CellsHumansMicroscopy, FluorescenceQuantum DotsRNA, MessengerDNAFluorescent DyesRNA, MessengerDNA encodinggene expressionimagingquantum dotssingle-cell measurements

Identifiers

PMID27273345
PMCPMC5036947

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.