Evidence map›Paper›PMID 27273316›Full record

ArticleNature communications2016

The Arabidopsis acetylated histone-binding protein BRAT1 forms a complex with BRP1 and prevents transcriptional silencing.

Cui-Jun Zhang, Xiao-Mei Hou, Lian-Mei Tan, Chang-Rong Shao, Huan-Wei Huang, Yong-Qiang Li, Lin Li, Tao Cai, She Chen, Xin-Jian He

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 44 citations in OpenAlex.

  1. A mutation in CsBRP1, encoding a PHD-type domain-containing protein, causes semi-dwarfism in cucumber (Cucumis sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
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  3. Review
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  5. Review
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  7. Novel Biallelic Variant in theFrontiers in genetics · 2022
    Article
  8. Article
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  10. Redox Components: Key Regulators of Epigenetic Modifications in Plants.International journal of molecular sciences · 2020
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Cui-Jun ZhangNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
Xiao-Mei HouNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
Lian-Mei TanNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
Chang-Rong ShaoNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
Huan-Wei HuangNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
Yong-Qiang LiNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
Lin LiNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
Tao CaiNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
She ChenNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.
Xin-Jian HeNational Institute of Biological Sciences, No. 7, Science Park Road, Zhongguancun Life Science Park, Beijing 102206, China.ORCID 0000-0002-2878-7461
National Institute of Biological Sciences, Beijing · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements and other repetitive DNA sequences are usually subject to DNA methylation and transcriptional silencing. However, anti-silencing mechanisms that promote transcription in these regions are not well understood. Here, we describe an anti-silencing factor, Bromodomain and ATPase domain-containing protein 1 (BRAT1), which we identified by a genetic screen in Arabidopsis thaliana. BRAT1 interacts with an ATPase domain-containing protein, BRP1 (BRAT1 Partner 1), and both prevent transcriptional silencing at methylated genomic regions. Although BRAT1 mediates DNA demethylation at a small set of loci targeted by the 5-methylcytosine DNA glycosylase ROS1, the involvement of BRAT1 in anti-silencing is largely independent of DNA demethylation. We also demonstrate that the bromodomain of BRAT1 binds to acetylated histone, which may facilitate the prevention of transcriptional silencing. Thus, BRAT1 represents a potential link between histone acetylation and transcriptional anti-silencing at methylated genomic regions, which may be conserved in eukaryotes.

Indexed as

Gene SilencingAcetylationArabidopsisArabidopsis ProteinsDNA DemethylationDNA MethylationGenetic LociHistonesModels, BiologicalMutationProtein BindingProtein DomainsRNA, MessengerRNA, PlantArabidopsis ProteinsHistonesRNA, MessengerRNA, Plant

Identifiers

PMID27273316
PMCPMC4899616
OpenAlexW2413766028

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.