Evidence map›Paper›PMID 27272414›Full record

ArticleAmerican journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons2017

Genome-Wide Association Study of Acute Renal Graft Rejection.

L Ghisdal, C Baron, Y Lebranchu, O Viklický, A Konarikova, M Naesens, D Kuypers, M Dinic, E Alamartine, G Touchard and 20 more

Abstract read
In one paragraph

Article in American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Novel Aspects of Immunogenetics and Post-Transplant Events in Kidney Transplantation.Transplant international : official journal of the European Society for Organ Transplantation · 2024
    Review
  4. KiT-GENIE, the French genetic biobank of kidney transplantation.European journal of human genetics : EJHG · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Non-HLA donor-recipient mismatches in kidney transplantation-A stone left unturned.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2020
    Review
  18. The impact of donor and recipient common clinical and genetic variation on estimated glomerular filtration rate in a European renal transplant population.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2019
    Article
  19. Article
  20. Genomic Mismatch atThe New England journal of medicine · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

L GhisdalDepartment of Nephrology, Dialysis, and Transplantation, Hôpital Erasme (Université Libre de Bruxelles), Brussels, Belgium.
C BaronDepartment of Nephrology, Centre Hospitalier Régional Universitaire de Tours, Tours, France.
Y LebranchuDepartment of Nephrology, Centre Hospitalier Régional Universitaire de Tours, Tours, France.
O ViklickýDepartment of Nephrology, Transplant Centre, Institute for Clinical and Experimental Medicine, Prague, Czech Republic.
A KonarikovaDepartment of Nephrology, Transplant Centre, Institute for Clinical and Experimental Medicine, Prague, Czech Republic.
M NaesensDepartment of Microbiology and Immunology, KU Leuven, University of Leuven, Leuven, Belgium.
D KuypersDepartment of Microbiology and Immunology, KU Leuven, University of Leuven, Leuven, Belgium.
M DinicDepartment of Nephrology, Centre Hospitalier Universitaire de Saint-Etienne, Saint-Etienne, France.
E AlamartineDepartment of Nephrology, Centre Hospitalier Universitaire de Saint-Etienne, Saint-Etienne, France.
G TouchardDepartment of Nephrology, Centre Hospitalier Universitaire de Poitiers, Poitiers, France.
T AntoineDepartment of Nephrology, Centre Hospitalier Universitaire de Poitiers, Poitiers, France.
M EssigDepartment of Nephrology, Dialysis, Transplantation, Centre Hospitalier Universitaire de Limoges and INSERM UMR 850 (Université de Limoges), Limoges, France.
J P RerolleDepartment of Nephrology, Dialysis, Transplantation, Centre Hospitalier Universitaire de Limoges and INSERM UMR 850 (Université de Limoges), Limoges, France.
P MervilleDepartment of Nephrology, Centre Hospitalier Universitaire de Bordeaux, Bordeaux, France.
J L TaupinDepartment of Immunology and Histocompatibility, Hôpital Saint-Louis, Paris, France.
Y Le MeurDepartment of Nephrology, Centre Hospitalier Universitaire la Cavale blanche, Brest, France.
A Grall-JezequelDepartment of Nephrology, Centre Hospitalier Universitaire la Cavale blanche, Brest, France.
F GlowackiDepartment of Nephrology, Centre Régional Hospitalier Universitaire de Lille, Lille, France.
C NoëlDepartment of Nephrology, Centre Régional Hospitalier Universitaire de Lille, Lille, France.
C LegendreDepartment of Renal Transplantation, Université Paris Descartes and Hôpital Necker, Assistance Publique-Hôpitaux de Paris, Paris, France.
D AnglicheauDepartment of Renal Transplantation, Université Paris Descartes and Hôpital Necker, Assistance Publique-Hôpitaux de Paris, Paris, France.
N BroedersDepartment of Nephrology, Dialysis, and Transplantation, Hôpital Erasme (Université Libre de Bruxelles), Brussels, Belgium.ORCID 0000-0001-5377-9335
W CoppietersUnit of Animal Genomics, Groupe Interdisciplinaire de Génoprotéomique Appliquée-Research (GIGA-R), University of Liège, Liège, Belgium.
E DocampoUnit of Animal Genomics, Groupe Interdisciplinaire de Génoprotéomique Appliquée-Research (GIGA-R), University of Liège, Liège, Belgium.
M GeorgesUnit of Animal Genomics, Groupe Interdisciplinaire de Génoprotéomique Appliquée-Research (GIGA-R), University of Liège, Liège, Belgium.
Z AjarchouhInstitute of Interdisciplinary Research in Molecular and Human biology (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium.
A MassartDepartment of Nephrology, Dialysis, and Transplantation, Hôpital Erasme (Université Libre de Bruxelles), Brussels, Belgium.
J RacapéCentre of Epidemiology, Biostatistic and Clinical Research, School of Public Health (Université Libre de Bruxelles), Brussels, Belgium.
D AbramowiczDepartment of Nephrology, Dialysis, and Transplantation, Hôpital Erasme (Université Libre de Bruxelles), Brussels, Belgium.
M AbramowiczInstitute of Interdisciplinary Research in Molecular and Human biology (IRIBHM), Université Libre de Bruxelles, Brussels, Belgium.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acute renal rejection is a major risk factor for chronic allograft dysfunction and long-term graft loss. We performed a genome-wide association study to detect loci associated with biopsy-proven acute T cell-mediated rejection occurring in the first year after renal transplantation. In a discovery cohort of 4127 European renal allograft recipients transplanted in eight European centers, we used a DNA pooling approach to compare 275 cases and 503 controls. In an independent replication cohort of 2765 patients transplanted in two European countries, we identified 313 cases and 531 controls, in whom we genotyped individually the most significant single nucleotide polymorphisms (SNPs) from the discovery cohort. In the discovery cohort, we found five candidate loci tagged by a number of contiguous SNPs (more than five) that was never reached in iterative in silico permutations of our experimental data. In the replication cohort, two loci remained significantly associated with acute rejection in both univariate and multivariate analysis. One locus encompasses PTPRO, coding for a receptor-type tyrosine kinase essential for B cell receptor signaling. The other locus involves ciliary gene CCDC67, in line with the emerging concept of a shared building design between the immune synapse and the primary cilium.

Indexed as

Polymorphism, Single NucleotideAcute DiseaseAdultCase-Control StudiesFemaleGenetic MarkersGenome-Wide Association StudyGraft RejectionHumansKidney Failure, ChronicKidney TransplantationMaleMicrotubule-Associated ProteinsMiddle AgedPrognosisReceptor-Like Protein Tyrosine Phosphatases, Class 3DEUP1 protein, humanGenetic MarkersMicrotubule-Associated ProteinsPTPRO protein, humanReceptor-Like Protein Tyrosine Phosphatases, Class 3Tumor Suppressor Proteinsbasic (laboratory) research/sciencebiomarkergeneticsgenomicsimmunogeneticsimmunosuppression/immune modulationkidney transplantation/nephrologymicroarray/gene arrayrejection: T cell mediated (TCMR)

Identifiers

PMID27272414
PMCPMC5215306

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.