Evidence map›Paper›PMID 27272319›Full record

ArticlePLoS genetics2016

Genetic Analysis Reveals a Hierarchy of Interactions between Polycystin-Encoding Genes and Genes Controlling Cilia Function during Left-Right Determination.

Daniel T Grimes, Jennifer L Keynton, Maria T Buenavista, Xingjian Jin, Saloni H Patel, Shinohara Kyosuke, Jennifer Vibert, Debbie J Williams, Hiroshi Hamada, Rohanah Hussain and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 64 citations in OpenAlex.

  1. AbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. BMP4 regulates asymmetric Pkd2 distribution in mouse nodal immotile cilia and ciliary mechanosensing required for left-right determination.Developmental dynamics : an official publication of the American Association of Anatomists · 2025
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Cells · 2024
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Identification of novel compound heterozygous variants in theFrontiers in molecular biosciences · 2023
    Article
  16. Article
  17. Review
  18. NovelFrontiers in medicine · 2021
    Article
  19. Monoallelic Mutations inCirculation. Genomic and precision medicine · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Daniel T GrimesMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, United Kingdom.
Jennifer L KeyntonMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, United Kingdom.
Maria T BuenavistaMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, United Kingdom.
Xingjian JinChapman University and the University of California, Irvine, Irvine, California, United States of America.
Saloni H PatelMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, United Kingdom.
Shinohara KyosukeDevelopmental Genetics Group, Graduate School of Frontier Biosciences, Osaka University and CREST, Japan Science and Technology Corporation (JST), Suita, Japan.
Jennifer VibertMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, United Kingdom.ORCID 0000-0003-3841-2222
Debbie J WilliamsMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, United Kingdom.
Hiroshi HamadaDevelopmental Genetics Group, Graduate School of Frontier Biosciences, Osaka University and CREST, Japan Science and Technology Corporation (JST), Suita, Japan.
Rohanah HussainDiamond Light Source, Beamline B23, Chilton, Didcot, United Kingdom.
Surya M NauliChapman University and the University of California, Irvine, Irvine, California, United States of America.
Dominic P NorrisMRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, United Kingdom.
Mary Lyon Centre at MRC Harwell · GBChapman University · USDiamond Light Source · GBThe University of Osaka · JP

Funding

The roles of primary cilia in cardiovascular systemR01DK080640 · NIDDK · UNIVERSITY OF TOLEDO · PI NAULI, SURYA · 2008 to 2012
$1.6M
Medical Research Council MC_U142670370Medical Research Council MC_U142684171NIDDK NIH HHS R01 DK080640
6 · The paper itself

Abstract

During mammalian development, left-right (L-R) asymmetry is established by a cilia-driven leftward fluid flow within a midline embryonic cavity called the node. This 'nodal flow' is detected by peripherally-located crown cells that each assemble a primary cilium which contain the putative Ca2+ channel PKD2. The interaction of flow and crown cell cilia promotes left side-specific expression of Nodal in the lateral plate mesoderm (LPM). Whilst the PKD2-interacting protein PKD1L1 has also been implicated in L-R patterning, the underlying mechanism by which flow is detected and the genetic relationship between Polycystin function and asymmetric gene expression remains unknown. Here, we characterize a Pkd1l1 mutant line in which Nodal is activated bilaterally, suggesting that PKD1L1 is not required for LPM Nodal pathway activation per se, but rather to restrict Nodal to the left side downstream of nodal flow. Epistasis analysis shows that Pkd1l1 acts as an upstream genetic repressor of Pkd2. This study therefore provides a genetic pathway for the early stages of L-R determination. Moreover, using a system in which cultured cells are supplied artificial flow, we demonstrate that PKD1L1 is sufficient to mediate a Ca2+ signaling response after flow stimulation. Finally, we show that an extracellular PKD domain within PKD1L1 is crucial for PKD1L1 function; as such, destabilizing the domain causes L-R defects in the mouse. Our demonstration that PKD1L1 protein can mediate a response to flow coheres with a mechanosensation model of flow sensation in which the force of fluid flow drives asymmetric gene expression in the embryo.

Indexed as

AnimalsBody PatterningCiliaEmbryo, MammalianGene Expression Regulation, DevelopmentalIntercellular Signaling Peptides and ProteinsMembrane ProteinsMesodermMiceMice, Inbred C3HMice, TransgenicNodal ProteinProtein Structure, TertiaryTRPP Cation ChannelsDte protein, mouseIntercellular Signaling Peptides and ProteinsMembrane ProteinsNodal ProteinNodal protein, mousePkd1l1 protein, mouseTRPP Cation Channels

Identifiers

PMID27272319
PMCPMC4894641
OpenAlexW2410971723

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.