Evidence map›Paper›PMID 27272207›Full record

ArticlePLoS genetics2016

Analysis of the Microprocessor in Dictyostelium: The Role of RbdB, a dsRNA Binding Protein.

Doreen Meier, Janis Kruse, Jann Buttlar, Michael Friedrich, Fides Zenk, Benjamin Boesler, Konrad U Förstner, Christian Hammann, Wolfgang Nellen

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Retrotransposon Domestication and Control inFrontiers in microbiology · 2017
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Doreen MeierDepartment of Genetics, FB10, Kassel University, Kassel, Germany.
Janis KruseRibogenetics Biochemistry Laboratory, Department of Life Science and Chemistry, Molecular Life Sciences Research Center, Jacobs University, Bremen, Germany.
Jann ButtlarDepartment of Genetics, FB10, Kassel University, Kassel, Germany.
Michael FriedrichDepartment of Genetics, FB10, Kassel University, Kassel, Germany.
Fides ZenkDepartment of Genetics, FB10, Kassel University, Kassel, Germany.
Benjamin BoeslerDepartment of Genetics, FB10, Kassel University, Kassel, Germany.
Konrad U FörstnerCore Unit System Medicine, University of Würzburg, Würzburg, Germany.ORCID 0000-0002-1481-2996
Christian HammannRibogenetics Biochemistry Laboratory, Department of Life Science and Chemistry, Molecular Life Sciences Research Center, Jacobs University, Bremen, Germany.
Wolfgang NellenDepartment of Genetics, FB10, Kassel University, Kassel, Germany.
University of Kassel · DEConstructor University · DEUniversity of Würzburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We identified the dsRNA binding protein RbdB as an essential component in miRNA processing in Dictyostelium discoideum. RbdB is a nuclear protein that accumulates, together with Dicer B, in nucleolar foci reminiscent of plant dicing bodies. Disruption of rbdB results in loss of miRNAs and accumulation of primary miRNAs. The phenotype can be rescued by ectopic expression of RbdB thus allowing for a detailed analysis of domain function. The lack of cytoplasmic dsRBD proteins involved in miRNA processing, suggests that both processing steps take place in the nucleus thus resembling the plant pathway. However, we also find features e.g. in the domain structure of Dicer which suggest similarities to animals. Reduction of miRNAs in the rbdB- strain and their increase in the Argonaute A knock out allowed the definition of new miRNAs one of which appears to belong to a new non-canonical class.

Indexed as

Argonaute ProteinsDictyosteliumEctopic Gene ExpressionGene Knockout TechniquesGreen Fluorescent ProteinsMicroRNAsNuclear ProteinsRibonuclease IIIRNA-Binding ProteinsRNA, Double-StrandedArgonaute ProteinsGreen Fluorescent ProteinsMicroRNAsNuclear ProteinsRibonuclease IIIRNA-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID27272207
PMCPMC4894637
OpenAlexW2414769037

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.