Evidence map›Paper›PMID 27271962›Full record

ArticleScientific reports2016

Complexity and Specificity of the Neutrophil Transcriptomes in Juvenile Idiopathic Arthritis.

Zihua Hu, Kaiyu Jiang, Mark Barton Frank, Yanmin Chen, James N Jarvis

Open access · goldAbstract readValidation Study
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Haptoglobin in Juvenile Idiopathic Arthritis.Pediatric rheumatology online journal · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Immunomics in Pediatric Rheumatic Diseases.Frontiers in medicine · 2019
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Zihua HuCenter for Computational Research, New York State Center of Excellence in Bioinformatics &Life Sciences, State University of New York at Buffalo, Buffalo, NY 14260, USA.
Kaiyu JiangDepartment of Pediatrics, Division of Allergy/Immunology/Rheumatology, University at Buffalo, Buffalo, NY 14203, USA.
Mark Barton FrankArthritis &Immunology Program, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA.
Yanmin ChenDepartment of Pediatrics, Division of Allergy/Immunology/Rheumatology, University at Buffalo, Buffalo, NY 14203, USA.
James N JarvisDepartment of Pediatrics, Division of Allergy/Immunology/Rheumatology, University at Buffalo, Buffalo, NY 14203, USA.
University at Buffalo, State University of New York · USOklahoma Medical Research Foundation · US

Funding

Translation of immunologic technologies from basic research into pre-clinical nonU19AI062629 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI COGGESHALL, KENNETH MARK · 2004 to 2023
$56.2M
VACCINE-TARGETED IDENTIFICATION OF FITNESS DETERMINANTS IN THE HIV-1 ENVELOPEP20RR016478 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI JIANG, YUHAO · 2001 to 2011
$35.8M
THE EFFECTS OF ERK PATHWAY INHIBITION ON DNA METHYLATION IN SLEP20RR015577 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GUTHRIDGE, JOEL MARVIN · 2000 to 2009
$21.5M
Microarray-Based Biomarkers in Juvenile Idiopathic ArthritisR01AR060604 · NIAMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI JARVIS, JAMES N · 2011 to 2015
$2.6M
Dynamics of Therapeutic Response Within the TREAT TrialR01AI084200 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI JARVIS, JAMES N · 2009 to 2010
$1.0M
NCRR NIH HHS P20 RR015577NCRR NIH HHS P20 RR016478NIAID NIH HHS R01 AI084200NIAID NIH HHS U19 AI062629NIAMS NIH HHS R01 AR060604
6 · The paper itself

Abstract

NIH projects such as ENCODE and Roadmap Epigenomics have revealed surprising complexity in the transcriptomes of mammalian cells. In this study, we explored transcriptional complexity in human neutrophils, cells generally regarded as nonspecific in their functions and responses. We studied distinct human disease phenotypes and found that, at the gene, gene isoform, and miRNA level, neutrophils exhibit considerable specificity in their transcriptomes. Thus, even cells whose responses are considered non-specific show tailoring of their transcriptional repertoire toward specific physiologic or pathologic contexts. We also found that miRNAs had a global impact on neutrophil transcriptome and are associated with innate immunity in juvenile idiopathic arthritis (JIA). These findings have important implications for our understanding of the link between genes, non-coding transcripts and disease phenotypes.

Indexed as

TranscriptomeAdolescentArthritis, JuvenileCase-Control StudiesExonsGene Regulatory NetworksHumansMicroRNAsNeutrophilsMicroRNAs

Identifiers

PMID27271962
PMCPMC4895221
OpenAlexW2410076418

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.