Evidence map›Paper›PMID 27271534›Full record

ArticleScientific reports2016

Metagenomic discovery of novel enzymes and biosurfactants in a slaughterhouse biofilm microbial community.

Stephan Thies, Sonja Christina Rausch, Filip Kovacic, Alexandra Schmidt-Thaler, Susanne Wilhelm, Frank Rosenau, Rolf Daniel, Wolfgang Streit, Jörg Pietruszka, Karl-Erich Jaeger

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Generalizable Direct Protein Sequencing With InstaNexus.Molecular & cellular proteomics : MCP · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Screening Strategies for Biosurfactant Discovery.Advances in biochemical engineering/biotechnology · 2022
    Article
  8. Review
  9. Review
  10. The Biosynthesis and Metabolism of theFrontiers in molecular biosciences · 2021
    Review
  11. Review
  12. The planctomycete Stieleria maiorica Mal15Communications biology · 2020
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Stephan ThiesInstitut für Molekulare Enzymtechnologie, Heinrich-Heine-Universität Düsseldorf, Jülich, Germany.
Sonja Christina RauschInstitut für Molekulare Enzymtechnologie, Heinrich-Heine-Universität Düsseldorf, Jülich, Germany.
Filip KovacicInstitut für Molekulare Enzymtechnologie, Heinrich-Heine-Universität Düsseldorf, Jülich, Germany.
Alexandra Schmidt-ThalerInstitut für Bioorganische Chemie, Heinrich-Heine-Universität Düsseldorf, Jülich, Germany.
Susanne WilhelmInstitut für Molekulare Enzymtechnologie, Heinrich-Heine-Universität Düsseldorf, Jülich, Germany.
Frank RosenauZentrum für Peptidpharmazeutika, Universität Ulm, Ulm, Germany.
Rolf DanielInstitut für Mikrobiologie und Genetik, Abteilung für Genomik und Angewandte Mikrobiologie &Göttingen Genomics Laboratory, Georg-August-Universität Göttingen, Germany.
Wolfgang StreitBiocenter Klein Flottbek, Department of Microbiology and Biotechnology, University of Hamburg, Hamburg, Germany.
Jörg PietruszkaInstitut für Bioorganische Chemie, Heinrich-Heine-Universität Düsseldorf, Jülich, Germany.
Karl-Erich JaegerInstitut für Molekulare Enzymtechnologie, Heinrich-Heine-Universität Düsseldorf, Jülich, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA derived from environmental samples is a rich source of novel bioactive molecules. The choice of the habitat to be sampled predefines the properties of the biomolecules to be discovered due to the physiological adaptation of the microbial community to the prevailing environmental conditions. We have constructed a metagenomic library in Escherichia coli DH10b with environmental DNA (eDNA) isolated from the microbial community of a slaughterhouse drain biofilm consisting mainly of species from the family Flavobacteriaceae. By functional screening of this library we have identified several lipases, proteases and two clones (SA343 and SA354) with biosurfactant and hemolytic activities. Sequence analysis of the respective eDNA fragments and subsequent structure homology modelling identified genes encoding putative N-acyl amino acid synthases with a unique two-domain organisation. The produced biosurfactants were identified by NMR spectroscopy as N-acyltyrosines with N-myristoyltyrosine as the predominant species. Critical micelle concentration and reduction of surface tension were similar to those of chemically synthesised N-myristoyltyrosine. Furthermore, we showed that the newly isolated N-acyltyrosines exhibit antibiotic activity against various bacteria. This is the first report describing the successful application of functional high-throughput screening assays for the identification of biosurfactant producing clones within a metagenomic library.

Indexed as

BiofilmsEnvironmental MicrobiologyAbattoirsAmino Acid SequenceAnti-Bacterial AgentsBacterial ProteinsBiosynthetic PathwaysEscherichia coliFlavobacteriumGenes, BacterialMetagenomeMicrobial ConsortiaMicrobial Sensitivity TestsOpen Reading FramesPhylogenySequence Analysis, DNAAnti-Bacterial AgentsBacterial ProteinsSurface-Active Agents

Identifiers

PMID27271534
PMCPMC4897644

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.