ArticleNature methods2016
Dense transcript profiling in single cells by image correlation decoding.
Article in Nature methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
42 citing papers in PubMed.
- Spatial multi-omics analyses of the tumor immune microenvironment: advances and novel therapeutic avenues.Molecular cancer · 2026Review
- Single-cell multi-omics in cancer immunotherapy: from tumor heterogeneity to personalized precision treatment.Molecular cancer · 2025Review
- Large field of view and spatial region of interest transcriptomics in fixed tissue.Communications biology · 2024Article
- The Advancement and Application of the Single-Cell Transcriptome in Biological and Medical Research.Biology · 2024Review
- Review
- Craniofacial developmental biology in the single-cell era.Development (Cambridge, England) · 2023Review
- Spatial biology of cancer evolution.Nature reviews. Genetics · 2023Review
- Spatially resolved transcriptomics: advances and applications.Blood science (Baltimore, Md.) · 2023Review
- The emerging landscape of spatial profiling technologies.Nature reviews. Genetics · 2022Review
- Museum of spatial transcriptomics.Nature methods · 2022Review
- Immune cell profiling in atherosclerosis: role in research and precision medicine.Nature reviews. Cardiology · 2022Review
- User-Accessible Machine Learning Approaches for Cell Segmentation and Analysis in Tissue.Frontiers in physiology · 2022Review
- High-Dimensional Tissue Profiling by Multiplexed Ion Beam Imaging.Methods in molecular biology (Clifton, N.J.) · 2022Article
- Extracellular Matrix in Synthetic Hydrogel-Based Prostate Cancer Organoids Regulate Therapeutic Response to EZH2 and DRD2 Inhibitors.Advanced materials (Deerfield Beach, Fla.) · 2022Article
- Visualization and modeling of inhibition of IL-1β and TNF-α mRNA transcription at the single-cell level.Scientific reports · 2021Article
- Spatial architecture of the immune microenvironment orchestrates tumor immunity and therapeutic response.Journal of hematology & oncology · 2021Review
- Selected In Situ Hybridization Methods: Principles and Application.Molecules (Basel, Switzerland) · 2021Review
- Article
- Cancer systems immunology.eLife · 2020Review
- Isotopically Encoded Nanotags for Multiplexed Ion Beam Imaging.Advanced materials technologies · 2020Article
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2 authors.
Funding
Abstract
Sequential barcoded fluorescent in situ hybridization (seqFISH) allows large numbers of molecular species to be accurately detected in single cells, but multiplexing is limited by the density of barcoded objects. We present correlation FISH (corrFISH), a method to resolve dense temporal barcodes in sequential hybridization experiments. Using corrFISH, we quantified highly expressed ribosomal protein genes in single cultured cells and mouse thymus sections, revealing cell-type-specific gene expression.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.