Evidence map›Paper›PMID 27270713›Full record

ArticleDatabase : the journal of biological databases and curation2016

HITSZ_CDR: an end-to-end chemical and disease relation extraction system for BioCreative V.

Haodi Li, Buzhou Tang, Qingcai Chen, Kai Chen, Xiaolong Wang, Baohua Wang, Zhe Wang

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. A review on machine learning approaches and trends in drug discovery.Computational and structural biotechnology journal · 2021
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Haodi LiIntelligent Computing Research Center, Harbin Institute of Technology Shenzhen School, China.
Buzhou TangIntelligent Computing Research Center, Harbin Institute of Technology Shenzhen School, China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, China tangbuzhou@gmail.com.
Qingcai ChenIntelligent Computing Research Center, Harbin Institute of Technology Shenzhen School, China.
Kai ChenIntelligent Computing Research Center, Harbin Institute of Technology Shenzhen School, China.
Xiaolong WangIntelligent Computing Research Center, Harbin Institute of Technology Shenzhen School, China.
Baohua WangCollege of Mathematics and statistics, Shenzhen University, China.
Zhe WangKey Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this article, an end-to-end system was proposed for the challenge task of disease named entity recognition (DNER) and chemical-induced disease (CID) relation extraction in BioCreative V, where DNER includes disease mention recognition (DMR) and normalization (DN). Evaluation on the challenge corpus showed that our system achieved the highest F1-scores 86.93% on DMR, 84.11% on DN, 43.04% on CID relation extraction, respectively. The F1-score on DMR is higher than our previous one reported by the challenge organizers (86.76%), the highest F1-score of the challenge.Database URL: http://database.oxfordjournals.org/content/2016/baw077.

Indexed as

Databases, FactualDiseaseComputational BiologyData MiningDrug DiscoveryDrug-Related Side Effects and Adverse ReactionsHumansMachine LearningToxicology

Identifiers

PMID27270713
PMCPMC4911788

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.