Evidence map›Paper›PMID 27270600›Full record

ArticleApplied microbiology and biotechnology2016

Analysis of coenzyme A activated compounds in actinomycetes.

Matías Cabruja, Bernardo Bazet Lyonnet, Gustavo Millán, Hugo Gramajo, Gabriela Gago

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Mycobacterial fatty acid catabolism is repressed by FdmR to sustain lipogenesis and virulence.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Matías CabrujaLaboratory of Physiology and Genetics of Actinomycetes, Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, (2000), Argentina.
Bernardo Bazet LyonnetLaboratory of Physiology and Genetics of Actinomycetes, Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, (2000), Argentina.
Gustavo MillánLaboratory of Mass Spectrometry, Centro Científico Tecnológico Rosario, CONICET, Rosario, Argentina.
Hugo GramajoLaboratory of Physiology and Genetics of Actinomycetes, Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, (2000), Argentina. gramajo@ibr-conicet.gov.ar.
Gabriela GagoLaboratory of Physiology and Genetics of Actinomycetes, Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, (2000), Argentina. gago@ibr-conicet.gov.ar.
Consejo Nacional de Investigaciones Científicas y Técnicas · ARCentro Científico Tecnólogico - Rosario · ARInstituto de Biología Molecular y Celular de Rosario · AR

Funding

Transcriptional regulation of lipid homeostasis in mycobacteriaR01AI095183 · NIAID · INSTITUTE OF MOLECULAR /CELLULAR BIOLOGY · PI GRAMAJO, HUGO · 2011 to 2014
$373k
NIAID NIH HHS R01 AI095183
6 · The paper itself

Abstract

Acyl-CoAs are crucial compounds involved in essential metabolic pathways such as the Krebs cycle and lipid, carbohydrate, and amino acid metabolisms, and they are also key signal molecules involved in the transcriptional regulation of lipid biosynthesis in many organisms. In this study, we took advantage of the high selectivity of mass spectrometry and developed an ion-pairing reverse-phase high-pressure liquid chromatography electrospray ionization high-resolution mass spectrometry (IP-RP-HPLC/ESI-HRMS) method to carry on a comprehensive analytical determination of the wide range of fatty acyl-CoAs present in actinomycetes. The advantage of using a QTOF spectrometer resides in the excellent mass accuracy over a wide dynamic range and measurements of the true isotope pattern that can be used for molecular formula elucidation of unknown analytes. As a proof of concept, we used this assay to determine the composition of the fatty acyl-CoA pools in Mycobacterium, Streptomyces, and Corynebacterium species, revealing an extraordinary difference in fatty acyl-CoA amounts and species distribution between the three genera and between the two species of mycobacteria analyzed, including the presence of different chain-length carboxy-acyl-CoAs, key substrates of mycolic acid biosynthesis. The method was also used to analyze the impact of two fatty acid synthase inhibitors on the acyl-CoA profile of Mycobacterium smegmatis, which showed some unexpected low levels of C24 acyl-CoAs in the isoniazid-treated cells. This robust, sensitive, and reliable method should be broadly applicable in the studies of the wide range of bacteria metabolisms in which acyl-CoA molecules participate.

Indexed as

ActinobacteriaAcyl Coenzyme AChromatography, High Pressure LiquidCorynebacteriumFatty Acid SynthasesFatty Acid Synthesis InhibitorsIsoniazidLipid MetabolismMycobacterium smegmatisSpectrometry, Mass, Electrospray IonizationStreptomycesAcyl Coenzyme AFatty Acid SynthasesFatty Acid Synthesis InhibitorsIsoniazidAcyl-CoACorynebacteriumIP-RP-HPLC-ESI-HRMSLipid synthesisMycobacteriumStreptomyces

Identifiers

PMID27270600
PMCPMC4947557
OpenAlexW2416452885

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.