Evidence map›Paper›PMID 27270415›Full record

ArticleHuman molecular genetics2016

Neuronal deficiency of ARV1 causes an autosomal recessive epileptic encephalopathy.

Elizabeth E Palmer, Kelsey E Jarrett, Rani K Sachdev, Fatema Al Zahrani, Mais Omar Hashem, Niema Ibrahim, Hugo Sampaio, Tejaswi Kandula, Rebecca Macintosh, Rajat Gupta and 16 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in Human molecular genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Insights intomSphere · 2026
    Article
  4. Article
  5. Article
  6. Observational
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Mice lackingThe Journal of biological chemistry · 2018
    Article
  16. Arv1; a "Mover and Shaker" of Subcellular Lipids.Contact (Thousand Oaks (Ventura County, Calif.))
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 10 institutions in 5 countries.

Elizabeth E PalmerDepartment of Women and Children's Health, Randwick Campus, University of New South Wales, NSW 2031, Australia.
Kelsey E JarrettDepartment of Molecular Physiology and Biophysics.
Rani K SachdevDepartment of Women and Children's Health, Randwick Campus, University of New South Wales, NSW 2031, Australia.
Fatema Al ZahraniDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia.
Mais Omar HashemDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia.
Niema IbrahimDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia.
Hugo SampaioDepartment of Women and Children's Health, Randwick Campus, University of New South Wales, NSW 2031, Australia.
Tejaswi KandulaDepartment of Women and Children's Health, Randwick Campus, University of New South Wales, NSW 2031, Australia.
Rebecca MacintoshSydney Children's Hospital, Randwick, NSW 2031, Australia.
Rajat GuptaDepartment of Molecular Physiology and Biophysics.
Donna M ConlonDivision of Translational Medicine and Human Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Jeffrey T BillheimerDivision of Translational Medicine and Human Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Daniel J RaderDivision of Translational Medicine and Human Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Kouichi FunatoDepartment of Biofunctional Science and Technology, Graduate School of Biosphere Science, Hiroshima University, 1-4-4 Kagamiyam, Higashi-Hiroshima 739-8528, Japan.
Christopher J WalkeyDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Chang Seok LeeDepartment of Molecular Physiology and Biophysics.
Christine LooDepartment of Women and Children's Health, Randwick Campus, University of New South Wales, NSW 2031, Australia.
Susan BrammahElectron Microscope Unit, Concord Repatriation General Hospital, Concord, NSW 2139, Australia.
George ElakisSEALS pathology, Randwick, NSW 2031, Australia.
Ying ZhuGenetics of Learning Disability Service, Waratah, NSW 2298, Australia.
Michael BuckleySEALS pathology, Randwick, NSW 2031, Australia.
Edwin P KirkDepartment of Women and Children's Health, Randwick Campus, University of New South Wales, NSW 2031, Australia.
Ann ByeDepartment of Women and Children's Health, Randwick Campus, University of New South Wales, NSW 2031, Australia.
Fowzan S AlkurayaDepartment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia.
Tony RoscioliSydney Children's Hospital, Randwick, NSW 2031, Australia.
William R LagorDepartment of Molecular Physiology and Biophysics lagor@bcm.edu.
UNSW Sydney · AUKing Faisal Specialist Hospital & Research Centre · SAUniversity of Pennsylvania · USBaylor College of Medicine · USConcord Repatriation General Hospital · AUGarvan Institute of Medical Research · AUHiroshima University · JPHunter Genetics · AUInstitute of Molecular Biology and Biophysics · RUSydney Children's Hospital · AU

Funding

TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM008231 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN · 1990 to 2019
$7.2M
NIGMS NIH HHS T32 GM008231
6 · The paper itself

Abstract

We report an individual who presented with severe neurodevelopmental delay and an intractable infantile-onset seizure disorder. Exome sequencing identified a homozygous single nucleotide change that abolishes a splice donor site in the ARV1 gene (c.294 + 1G > A homozygous). This variant completely prevented splicing in minigene assays, and resulted in exon skipping and an in-frame deletion of 40 amino acids in primary human fibroblasts (NP_073623.1: p.(Lys59_Asn98del). The p.(Lys59_Asn98del) and previously reported p.(Gly189Arg) ARV1 variants were evaluated for protein expression and function. The p.(Gly189Arg) variant partially rescued the temperature-dependent growth defect in arv1Δ yeast, while p.(Lys59-Asn98del) completely failed to rescue at restrictive temperature. In contrast to wild type human ARV1, neither variant expressed detectable levels of protein in mammalian cells. Mice with a neuronal deletion of Arv1 recapitulated the human phenotype, exhibiting seizures and a severe survival defect in adulthood. Our data support ARV1 deficiency as a cause of autosomal recessive epileptic encephalopathy.

Indexed as

Genetic Predisposition to DiseaseCarrier ProteinsExonsFemaleGenotypeHumansInfantMembrane ProteinsMutationPedigreePhenotypeRNA Splice SitesSpasms, InfantileARV1 protein, humanARV1 protein, mouseCarrier ProteinsMembrane ProteinsRNA Splice Sites

Identifiers

PMID27270415
PMCPMC5181598
OpenAlexW2417770129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.