Evidence map›Paper›PMID 27270294›Full record

ArticleEuropean biophysics journal : EBJ2017

Analysis of self-assembly of S-layer protein slp-B53 from Lysinibacillus sphaericus.

Jun Liu, Sven Falke, Bjoern Drobot, Dominik Oberthuer, Alexey Kikhney, Tobias Guenther, Karim Fahmy, Dmitri Svergun, Christian Betzel, Johannes Raff

Abstract read
PubMed Publisher
In one paragraph

Article in European biophysics journal : EBJ, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Jun LiuLaboratory for Structural Biology of Infection and Inflammation, Institute of Biochemistry and Molecular Biology, University of Hamburg, Martin-Luther-King Platz 6, 20146, Hamburg, Germany.
Sven FalkeLaboratory for Structural Biology of Infection and Inflammation, Institute of Biochemistry and Molecular Biology, University of Hamburg, Martin-Luther-King Platz 6, 20146, Hamburg, Germany.
Bjoern DrobotInstitute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstr. 400, 01328, Dresden, Germany.
Dominik OberthuerLaboratory for Structural Biology of Infection and Inflammation, Institute of Biochemistry and Molecular Biology, University of Hamburg, Martin-Luther-King Platz 6, 20146, Hamburg, Germany.
Alexey KikhneyEMBL Hamburg, European Molecular Biology Laboratory, Notkestr. 85, 22607, Hamburg, Germany.
Tobias GuentherHelmholtz Institute Freiberg for Resource Technology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstr. 400, 01328, Dresden, Germany.
Karim FahmyInstitute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstr. 400, 01328, Dresden, Germany.
Dmitri SvergunEMBL Hamburg, European Molecular Biology Laboratory, Notkestr. 85, 22607, Hamburg, Germany.
Christian BetzelLaboratory for Structural Biology of Infection and Inflammation, Institute of Biochemistry and Molecular Biology, University of Hamburg, Martin-Luther-King Platz 6, 20146, Hamburg, Germany.
Johannes RaffInstitute of Resource Ecology, Helmholtz-Zentrum Dresden-Rossendorf, Bautzner Landstr. 400, 01328, Dresden, Germany. j.raff@hzdr.de.
Universität Hamburg · DEHelmholtz-Zentrum Dresden-Rossendorf · DEEuropean Molecular Biology Laboratory · DEHelmholtz Institute Freiberg for Resource Technology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The formation of stable and functional surface layers (S-layers) via self-assembly of surface-layer proteins on the cell surface is a dynamic and complex process. S-layers facilitate a number of important biological functions, e.g., providing protection and mediating selective exchange of molecules and thereby functioning as molecular sieves. Furthermore, S-layers selectively bind several metal ions including uranium, palladium, gold, and europium, some of them with high affinity. Most current research on surface layers focuses on investigating crystalline arrays of protein subunits in Archaea and bacteria. In this work, several complementary analytical techniques and methods have been applied to examine structure-function relationships and dynamics for assembly of S-layer protein slp-B53 from Lysinibacillus sphaericus: (1) The secondary structure of the S-layer protein was analyzed by circular dichroism spectroscopy; (2) Small-angle X-ray scattering was applied to gain insights into the three-dimensional structure in solution; (3) The interaction with bivalent cations was followed by differential scanning calorimetry; (4) The dynamics and time-dependent assembly of S-layers were followed by applying dynamic light scattering; (5) The two-dimensional structure of the paracrystalline S-layer lattice was examined by atomic force microscopy. The data obtained provide essential structural insights into the mechanism of S-layer self-assembly, particularly with respect to binding of bivalent cations, i.e., Mg

Indexed as

BacillaceaeBacterial ProteinsCations, DivalentMembrane GlycoproteinsModels, MolecularProtein StabilityProtein Structure, SecondaryBacterial ProteinsCations, DivalentMembrane GlycoproteinsS-layer proteinsAFMBivalent cationsDSCSAXSSelf-assemblySurface-layer protein

Identifiers

PMID27270294
OpenAlexW2411756132

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.