Evidence map›Paper›PMID 27268053›Full record

ArticleThe Journal of biological chemistry2016

The Baseplate of Lactobacillus delbrueckii Bacteriophage Ld17 Harbors a Glycerophosphodiesterase.

Anneleen Cornelissen, Irina Sadovskaya, Evgeny Vinogradov, Stéphanie Blangy, Silvia Spinelli, Eoghan Casey, Jennifer Mahony, Jean-Paul Noben, Fabio Dal Bello, Christian Cambillau and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. A host-encoded prophage targets a Candidate Phyla Radiation bacterium and shapes episymbiotic interactions.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Selection of mutantApplied and environmental microbiology · 2023
    Article
  5. Article
  6. Review
  7. BioprospectingViruses · 2020
    Article
  8. Article
  9. The Journal of biological chemistry · 2018
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 5 countries.

Anneleen CornelissenFrom the School of Microbiology and.
Irina SadovskayaEquipe Biochimie des Produits Aquatiques, Université du Littoral-Côte d'Opale, Boulevard du Bassin Napoléon, BP 120, 62327 Boulogne-sur-mer, France.
Evgeny VinogradovNational Research Council, 100 Sussex Drive, Ottawa K1A 0R6, Canada.
Stéphanie BlangyAix-Marseille Université, Architecture et Fonction des Macromolécules Biologiques, Campus de Luminy, 13288 Marseille Cedex 09, France, CNRS, Architecture et Fonction des Macromolécules Biologiques, UMR 6098, Campus de Luminy, 13288 Marseille Cedex 09, France.
Silvia SpinelliAix-Marseille Université, Architecture et Fonction des Macromolécules Biologiques, Campus de Luminy, 13288 Marseille Cedex 09, France, CNRS, Architecture et Fonction des Macromolécules Biologiques, UMR 6098, Campus de Luminy, 13288 Marseille Cedex 09, France.
Eoghan CaseyFrom the School of Microbiology and.
Jennifer MahonyFrom the School of Microbiology and.
Jean-Paul NobenBiomedical Research Institute (Biomed) and School of Life Sciences, Transnationale Universiteit Limburg, Hasselt University, Agoralaan-Building C, BE-3590 Diepenbeek, Belgium, and.
Fabio Dal BelloSacco srl, 22071 Cadorago CO, Italy.
Christian CambillauAix-Marseille Université, Architecture et Fonction des Macromolécules Biologiques, Campus de Luminy, 13288 Marseille Cedex 09, France, CNRS, Architecture et Fonction des Macromolécules Biologiques, UMR 6098, Campus de Luminy, 13288 Marseille Cedex 09, France.
Douwe van SinderenFrom the School of Microbiology and APC Microbiome Institute, University College Cork, Cork, Ireland, d.vansinderen@ucc.ie.
University College Cork · IEAix-Marseille Université · FRArchitecture et Fonction des Macromolécules Biologiques · FRCentre National de la Recherche Scientifique · FRHasselt University · BELuigi Sacco Hospital · ITNational Research Council Canada · CAUniversité du littoral côte d'opale · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycerophosphodiester phosphodiesterases (GDPDs; EC 3.1.4.46) typically hydrolyze glycerophosphodiesters to sn-glycerol 3-phosphate (Gro3P) and their corresponding alcohol during patho/physiological processes in bacteria and eukaryotes. GDPD(-like) domains were identified in the structural particle of bacterial viruses (bacteriophages) specifically infecting Gram-positive bacteria. The GDPD of phage 17 (Ld17; GDPDLd17), representative of the group b Lactobacillus delbrueckii subsp. bulgaricus (Ldb)-infecting bacteriophages, was shown to hydrolyze, besides the simple glycerophosphodiester, two complex surface-associated carbohydrates of the Ldb17 cell envelope: the Gro3P decoration of the major surface polysaccharide d-galactan and the oligo(glycerol phosphate) backbone of the partially glycosylated cell wall teichoic acid, a minor Ldb17 cell envelope component. Degradation of cell wall teichoic acid occurs according to an exolytic mechanism, and Gro3P substitution is presumed to be inhibitory for GDPDLd17 activity. The presence of the GDPDLd17 homotrimer in the viral baseplate structure involved in phage-host interaction together with the dependence of native GDPD activity, adsorption, and efficiency of plating of Ca(2+) ions supports a role for GDPDLd17 activity during phage adsorption and/or phage genome injection. In contrast to GDPDLd17, we could not identify any enzymatic activity for the GDPD-like domain in the neck passage structure of phage 340, a 936-type Lactococcus lactis subsp. lactis bacteriophage.

Indexed as

BacteriophagesLactobacillus delbrueckiiPhosphoric Diester HydrolasesPolysaccharides, BacterialViral Proteinsglycerophosphodiester phosphodiesterasePhosphoric Diester HydrolasesPolysaccharides, BacterialViral Proteinsbacteriophagecarbohydratecell wallD-galactanLactobacillusphosphodiesterasessn-glycerol-3-phosphateteichoic acid

Identifiers

PMID27268053
PMCPMC4974393
OpenAlexW2415099509

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.