Evidence map›Paper›PMID 27267372›Full record

ArticleVirology journal2016

Equine rhinitis B viruses in horse fecal samples from the Middle East.

Patrick C Y Woo, Susanna K P Lau, Garnet K Y Choi, Yi Huang, Renate Wernery, Sunitha Joseph, Emily Y M Wong, Shyna K Elizabeth, Nissy Annie Georgy Patteril, Tong Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Infectious disease surveillance of apparently healthy horses at a multi-day show using a novel nanoscale real-time PCR panel.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2021
    Article
  6. Middle East respiratory syndrome (MERS) coronavirus and dromedaries.Veterinary journal (London, England : 1997) · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Patrick C Y WooState Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Hong Kong, China. pcywoo@hku.hk.
Susanna K P LauState Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Hong Kong, China.
Garnet K Y ChoiDepartment of Microbiology, The University of Hong Kong, Hong Kong, China.
Yi HuangDepartment of Microbiology, The University of Hong Kong, Hong Kong, China.
Renate WerneryCentral Veterinary Research Laboratory, Dubai, United Arab Emirates.
Sunitha JosephCentral Veterinary Research Laboratory, Dubai, United Arab Emirates.
Emily Y M WongDepartment of Microbiology, The University of Hong Kong, Hong Kong, China.
Shyna K ElizabethCentral Veterinary Research Laboratory, Dubai, United Arab Emirates.
Nissy Annie Georgy PatterilCentral Veterinary Research Laboratory, Dubai, United Arab Emirates.
Tong LiDepartment of Microbiology, The University of Hong Kong, Hong Kong, China.
Ulrich WerneryCentral Veterinary Research Laboratory, Dubai, United Arab Emirates. cvrl@cvrl.ae.
Kwok-Yung YuenState Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Hong Kong, China.
University of Hong Kong · HKCentral Veterinary Research Laboratory · AE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAmong all known picornaviruses, only two species, equine rhinitis A virus and equine rhinitis B virus (ERBV) are known to infect horses, causing respiratory infections. No reports have described the detection of ERBV in fecal samples of horses and no complete genome sequences of ERBV3 are available.

methodsWe performed a molecular epidemiology study to detect ERBVs in horses from Dubai and Hong Kong. Complete genome sequencing of the ERBVs as well as viral loads and genome, phylogenetic and evolutionary analysis were performed on the positive samples.

resultsERBV was detected in four (13.8 %) of the 29 fecal samples in horses from Dubai, with viral loads 8.28 × 10(3) to 5.83 × 10(4) copies per ml, but none of the 47 fecal samples in horses from Hong Kong by RT-PCR. Complete genome sequencing and phylogenetic analysis showed that three of the four strains were ERBV3 and one was ERBV2. The major difference between the genomes of ERBV3 and those of ERBV1 and ERBV2 lied in the amino acid sequences of their VP1 proteins. The Ka/Ks ratios of all the coding regions in the ERBV3 genomes were all <0.1, suggesting that ERBV3 were stably evolving in horses. Using the uncorrelated lognormal distributed relaxed clock model on VP1 gene, the date of the most recent common ancestor (MRCA) of ERBV3 was estimated to be 1785 (HPDs, 1176 to 1937) and the MRCA dates of ERBV1 and ERBV2 were estimated to be 1848 (HPDs, 1466 to 1949) respectively.

conclusionsBoth acid stable (ERBV3) and acid labile (ERBV2) ERBVs could be found in fecal samples of horses. Detection of ERBVs in fecal samples would have implications for their transmission and potential role in gastrointestinal diseases as well as fecal sampling as an alternative method of identifying infected horses.

Indexed as

AnimalsErbovirusFecesGenome, ViralHong KongHorse DiseasesHorsesMiddle EastMolecular EpidemiologyPicornaviridae InfectionsSequence Analysis, DNAAnimal RNA virusesHorsesPicornavirus

Identifiers

PMID27267372
PMCPMC4897857
OpenAlexW2419187004

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.