Evidence map›Paper›PMID 27266708›Full record

ArticleEMBO reports2016

Higher-order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle.

Chiara Bertipaglia, Sarah Schneider, Arjen J Jakobi, Abul K Tarafder, Yury S Bykov, Andrea Picco, Wanda Kukulski, Jan Kosinski, Wim Jh Hagen, Arvind C Ravichandran and 4 more

Abstract read
In one paragraph

Article in EMBO reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. In situ structural analysis reveals membrane shape transitions during autophagosome formation.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  3. Article
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  5. Review
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  13. Review
  14. Review
  15. Next-generation electron microscopy in autophagy research.Current opinion in structural biology · 2016
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Chiara BertipagliaStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Sarah SchneiderStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Arjen J JakobiStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany Hamburg Unit, European Molecular Biology Laboratory, Hamburg, Germany.
Abul K TarafderStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Yury S BykovStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Andrea PiccoCell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Wanda KukulskiStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Jan KosinskiStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Wim Jh HagenStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Arvind C RavichandranStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Matthias WilmannsHamburg Unit, European Molecular Biology Laboratory, Hamburg, Germany.ORCID 0000-0003-2486-5239
Marko KaksonenCell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
John Ag BriggsStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Carsten SachseStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany carsten.sachse@embl.de.ORCID 0000-0002-1168-5143

Funding

Medical Research Council MC_UP_1201/8
6 · The paper itself

Abstract

Selective autophagy is the mechanism by which large cargos are specifically sequestered for degradation. The structural details of cargo and receptor assembly giving rise to autophagic vesicles remain to be elucidated. We utilize the yeast cytoplasm-to-vacuole targeting (Cvt) pathway, a prototype of selective autophagy, together with a multi-scale analysis approach to study the molecular structure of Cvt vesicles. We report the oligomeric nature of the major Cvt cargo Ape1 with a combined 2.8 Å X-ray and negative stain EM structure, as well as the secondary cargo Ams1 with a 6.3 Å cryo-EM structure. We show that the major dodecameric cargo prApe1 exhibits a tendency to form higher-order chain structures that are broken upon interaction with the receptor Atg19 in vitro The stoichiometry of these cargo-receptor complexes is key to maintaining the size of the Cvt aggregate in vivo Using correlative light and electron microscopy, we further visualize key stages of Cvt vesicle biogenesis. Our findings suggest that Atg19 interaction limits Ape1 aggregate size while serving as a vehicle for vacuolar delivery of tetrameric Ams1.

Indexed as

AutophagyAminopeptidasesAutophagy-Related ProteinsBiological TransportCytoplasmMembranesModels, BiologicalProtein BindingProtein ConformationProtein MultimerizationReceptors, Cell SurfaceSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVacuolesVesicular Transport ProteinsAminopeptidasesAPE1 protein, S cerevisiaeATG19 protein, S cerevisiaeAutophagy-Related ProteinsReceptors, Cell SurfaceSaccharomyces cerevisiae ProteinsVesicular Transport Proteinsautophagy cargoautophagy receptorcorrelative light and electron microscopyelectron cryomicroscopyfluorescence light microscopyselective autophagyX‐ray crystallography

Identifiers

PMID27266708
PMCPMC4931565

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.