Evidence map›Paper›PMID 27262448›Full record

ArticleJournal of molecular neuroscience : MN2016

Linkage Study Revealed Complex Haplotypes in a Multifamily due to Different Mutations in CAPN3 Gene in an Iranian Ethnic Group.

Marzieh Mojbafan, Seyed Hassan Tonekaboni, Maryam Abiri, Soudeh Kianfar, Ameneh Sarhadi, Yalda Nilipour, Javad Tavakkoly-Bazzaz, Sirous Zeinali

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Article in Journal of molecular neuroscience : MN, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Marzieh MojbafanDepartment of Molecular Medicine, Biotechnology Research Center, Pasteur Institute of Iran, Pasteur St., Tehran, Iran.
Seyed Hassan TonekaboniPediatric Neurology Center of Excellence, Department of Pediatric Neurology, Mofid Children Hospital, Faculty of Medicine, Shahid Beheshti Medical University, Tehran, Iran.
Maryam AbiriDepartment of Molecular Medicine, Biotechnology Research Center, Pasteur Institute of Iran, Pasteur St., Tehran, Iran.
Soudeh KianfarMedical Genetics Laboratory, Kawsar Human Genetics Research Center (KHGRC), No. 41 Majlesi St., Valiasr St., Tehran, Iran, 1595645513.
Ameneh SarhadiMedical Genetics Laboratory, Kawsar Human Genetics Research Center (KHGRC), No. 41 Majlesi St., Valiasr St., Tehran, Iran, 1595645513.
Yalda NilipourPediatric Pathology Research Center, Mofid Children's Hospital, Shahid Beheshti Medical University (SBMU), Tehran, Iran.
Javad Tavakkoly-BazzazDepartment of Medical Genetics, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran.
Sirous ZeinaliDepartment of Molecular Medicine, Biotechnology Research Center, Pasteur Institute of Iran, Pasteur St., Tehran, Iran. zeinali@kawsar.ir.
Shahid Beheshti University of Medical Sciences · IRBiotechnology Research Center · IRPasteur Institute of Iran · IRTehran University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Calpainopathy is an autosomal recessive form of limb girdle muscular dystrophies which is caused by mutation in CAPN3 gene. In the present study, co-segregation of this disorder was analyzed with four short tandem repeat markers linked to the CAPN3 gene. Three apparently unrelated Iranian families with same ethnicity were investigated. Haplotype analysis and sequencing of the CAPN3 gene were performed. DNA sample from one of the patients was simultaneously sent for next-generation sequencing. DNA sequencing identified two mutations. It was seen as a homozygous c.2105C>T in exon 19 in one family, a homozygous novel mutation c.380G>A in exon 3 in another family, and a compound heterozygote form of these two mutations in the third family. Next-generation sequencing also confirmed our results. It was expected that, due to the rare nature of limb girdle muscular dystrophies, affected individuals from the same ethnic group share similar mutations. Haplotype analysis showed two different homozygote patterns in two families, yet a compound heterozygote pattern in the third family as seen in the mutation analysis. This study shows that haplotype analysis would help in determining presence of different founders.

Indexed as

HaplotypesMutationAdolescentCalpainChildExonsFemaleHeterozygoteHomozygoteHumansIranMaleMicrosatellite RepeatsMuscle ProteinsMuscular Dystrophies, Limb-GirdlePedigreeCalpainCAPN3 protein, humanMuscle ProteinsAutozygosity mappingCompound heterozygoteEthnicityLimb girdle muscular dystrophyShort tandem repeat

Identifiers

PMID27262448
OpenAlexW2411220198

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.