Evidence map›Paper›PMID 27261087›Full record

ArticleThe FEBS journal2016

RubisCO selection using the vigorously aerobic and metabolically versatile bacterium Ralstonia eutropha.

Sriram Satagopan, F Robert Tabita

Open access · bronzeAbstract read
In one paragraph

Article in The FEBS journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 38 citations in OpenAlex.

  1. In vivo directed evolution of an ultrafast Rubisco from a semianaerobic environment imparts oxygen resistance.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. Review
  4. Stable Platform for Mevalonate Bioproduction from COACS sustainable chemistry & engineering · 2024
    Article
  5. Engineering Rubisco to enhance COSynthetic and systems biotechnology · 2024
    Review
  6. Article
  7. Prospects for engineeringEngineering microbiology · 2023
    Review
  8. Review
  9. Article
  10. The reliance of glycerol utilization by Cupriavidus necator on COApplied microbiology and biotechnology · 2022
    Article
  11. Review
  12. Article
  13. Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Sriram SatagopanDepartment of Microbiology, The Ohio State University, Columbus, OH, USA.
F Robert TabitaDepartment of Microbiology, The Ohio State University, Columbus, OH, USA.
The Ohio State University · US

Funding

One Enzyme for Two Distinct MetabolismsR01GM095742 · NIGMS · OHIO STATE UNIVERSITY · PI TABITA, F ROBERT · 2011 to 2014
$1.1M
NIGMS NIH HHS R01 GM095742
6 · The paper itself

Abstract

unlabelledRecapturing atmospheric CO2 is key to reducing global warming and increasing biological carbon availability. Ralstonia eutropha is a biotechnologically useful aerobic bacterium that uses the Calvin-Benson-Bassham (CBB) cycle and the enzyme ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO) for CO2 utilization, suggesting that it may be a useful host to bioselect RubisCO molecules with improved CO2 -capture capabilities. A host strain of R. eutropha was constructed for this purpose after deleting endogenous genes encoding two related RubisCOs. This strain could be complemented for CO2 -dependent growth by introducing native or heterologous RubisCO genes. Mutagenesis and suppressor selection identified amino acid substitutions in a hydrophobic region that specifically influences RubisCO's interaction with its substrates, particularly O2 , which competes with CO2 at the active site. Unlike most RubisCOs, the R. eutropha enzyme has evolved to retain optimal CO2 -fixation rates in a fast-growing host, despite the presence of high levels of competing O2 . Yet its structure-function properties resemble those of several commonly found RubisCOs, including the higher plant enzymes, allowing strategies to engineer analogous enzymes. Because R. eutropha can be cultured rapidly under harsh environmental conditions (e.g., with toxic industrial flue gas), in the presence of near saturation levels of oxygen, artificial selection and directed evolution studies in this organism could potentially impact efforts toward improving RubisCO-dependent biological CO2 utilization in aerobic environments. ENZYMES: d-ribulose 1,5-bisphosphate carboxylase/oxygenase, EC 4.1.1.39; phosphoribulokinase, EC 2.7.1.19.

Indexed as

AerobiosisCupriavidus necatorDirected Molecular EvolutionGenetic Complementation TestMutagenesis, Site-DirectedPhosphotransferases (Alcohol Group Acceptor)Ribulose-Bisphosphate CarboxylasephosphoribulokinasePhosphotransferases (Alcohol Group Acceptor)Ribulose-Bisphosphate Carboxylaseartificial selectionCalvin cyclecarbon metabolismCO2 fixationRalstonia eutrophaRubisCO

Identifiers

PMID27261087
PMCPMC4975643
OpenAlexW2410740394

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.