Evidence map›Paper›PMID 27261081›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Diversity and divergence of the glioma-infiltrating T-cell receptor repertoire.

Jennifer S Sims, Boris Grinshpun, Yaping Feng, Timothy H Ung, Justin A Neira, Jorge L Samanamud, Peter Canoll, Yufeng Shen, Peter A Sims, Jeffrey N Bruce

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
  2. Article
  3. Mapping T cell infiltration patterns in glioma tumor tissue.medRxiv : the preprint server for health sciences · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Human TCR repertoire in cancer.Cancer medicine · 2024
    Review
  8. Article
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  10. Article
  11. Review
  12. Article
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  15. Review
  16. Article
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  20. Review

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Jennifer S SimsDepartment of Neurological Surgery, Columbia University Medical Center, New York, NY 10032;
Boris GrinshpunDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032;
Yaping FengDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032; Waksman Institute of Microbiology Genomics Core Facility, Rutgers, The State University of New Jersey, Piscataway, NJ 08854;
Timothy H UngDepartment of Neurological Surgery, Columbia University Medical Center, New York, NY 10032; Department of Neurosurgery, University of Colorado School of Medicine, Aurora, CO 80045;
Justin A NeiraDepartment of Neurological Surgery, Columbia University Medical Center, New York, NY 10032;
Jorge L SamanamudDepartment of Neurological Surgery, Columbia University Medical Center, New York, NY 10032;
Peter CanollDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY 10032;
Yufeng ShenDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032; Department of Biomedical Informatics, Columbia University Medical Center, New York, NY 10032; JP Sulzberger Columbia Genome Center, Columbia University Medical Center, New York, NY 10032; ys2411@columbia.edu pas2182@columbia.edu jnb2@columbia.edu.
Peter A SimsDepartment of Systems Biology, Columbia University Medical Center, New York, NY 10032; JP Sulzberger Columbia Genome Center, Columbia University Medical Center, New York, NY 10032; Department of Biochemistry & Molecular Biophysics, Columbia University Medical Center, New York, NY 10032 ys2411@columbia.edu pas2182@columbia.edu jnb2@columbia.edu.
Jeffrey N BruceDepartment of Neurological Surgery, Columbia University Medical Center, New York, NY 10032; ys2411@columbia.edu pas2182@columbia.edu jnb2@columbia.edu.
Columbia University Irving Medical Center · USNeurological Surgery · USRutgers, The State University of New Jersey · US

Funding

Topology of Cancer Evolution and HeterogeneityU54CA193313 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IAVARONE, ANTONIO, RABADAN, RAUL · 2015 to 2020
$10.4M
The Role of White Matter Progenitors in Glioma Formation and ProgressionR01NS066955 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CANOLL, PETER · 2010 to 2014
$1.7M
A Microfluidic System for Image-Guided RNA-Seq of Single Cells in GlioblastomaK01EB016071 · NIBIB · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SIMS, PETER ALAN · 2012 to 2016
$863k
NCI NIH HHS U54 CA193313NIBIB NIH HHS K01 EB016071NINDS NIH HHS R01 NS066955
6 · The paper itself

Abstract

Although immune signaling has emerged as a defining feature of the glioma microenvironment, how the underlying structure of the glioma-infiltrating T-cell population differs from that of the blood from which it originates has been difficult to measure directly in patients. High-throughput sequencing of T-cell receptor (TCR) repertoires (TCRseq) provides a population-wide statistical description of how T cells respond to disease. We have defined immunophenotypes of whole repertoires based on TCRseq of the α- and β-chains from glioma tissue, nonneoplastic brain tissue, and peripheral blood from patients. Using information theory, we partitioned the diversity of these TCR repertoires into that from the distribution of VJ cassette combinations and diversity due to VJ-independent factors, such as selection due to antigen binding. Tumor-infiltrating lymphocytes (TILs) possessed higher VJ-independent diversity than nonneoplastic tissue, stratifying patients according to tumor grade. We found that the VJ-independent components of tumor-associated repertoires diverge more from their corresponding peripheral repertoires than T-cell populations in nonneoplastic brain tissue, particularly for low-grade gliomas. Finally, we identified a "signature" set of TCRs whose use in peripheral blood is associated with patients exhibiting low TIL divergence and is depleted in patients with highly divergent TIL repertoires. This signature is detectable in peripheral blood, and therefore accessible noninvasively. We anticipate that these immunophenotypes will be foundational to monitoring and predicting response to antiglioma vaccines and immunotherapy.

Indexed as

Brain NeoplasmsGliomaHumansLymphocytes, Tumor-InfiltratingReceptors, Antigen, T-CellReceptors, Antigen, T-CellglioblastomagliomaimmunooncologyimmunoprofilingT-cell receptor

Identifiers

PMID27261081
PMCPMC4922177
OpenAlexW2419671718

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.