Evidence map›Paper›PMID 27260513›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2016

8-Oxo-7,8-dihydro-2'-deoxyguanosine and other lesions along the coding strand of the exon 5 of the tumour suppressor gene P53 in a breast cancer case-control study.

Beniamino Brancato, Armelle Munnia, Filippo Cellai, Elisabetta Ceni, Tommaso Mello, Simonetta Bianchi, Sandra Catarzi, Gabriella G Risso, Andrea Galli, Marco E M Peluso

Abstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Review
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  8. Dehydroepiandrosterone modulates oxidative DNA damage in pancreatic cancer: A case-control study.JGH open : an open access journal of gastroenterology and hepatology · 2021
    Article
  9. Oxidative stress induction in woodworkers occupationally exposed to wood dust and formaldehyde.Journal of occupational medicine and toxicology (London, England) · 2021
    Article
  10. Review
  11. Article
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Beniamino BrancatoSenology Unit, ISPO-Cancer Prevention and Research Institute, 50139 - Florence, Italy.
Armelle MunniaCancer Risk Factor Branch, Cancer Prevention Laboratory, ISPO-Cancer Prevention and Research Institute, 50139 Florence, Italy.
Filippo CellaiCancer Risk Factor Branch, Cancer Prevention Laboratory, ISPO-Cancer Prevention and Research Institute, 50139 Florence, Italy.
Elisabetta CeniDepartment of Experimental and Clinical Biomedical Sciences, University of Florence, 50139 - Florence, Italy.
Tommaso MelloDepartment of Experimental and Clinical Biomedical Sciences, University of Florence, 50139 - Florence, Italy.
Simonetta BianchiPathological Anatomy Unit, Department of Surgery and Translational Medicine, University of Florence - Careggi University Hospital, 50139 - Florence, Italy.
Sandra CatarziSenology Unit, ISPO-Cancer Prevention and Research Institute, 50139 - Florence, Italy.
Gabriella G RissoSenology Unit, ISPO-Cancer Prevention and Research Institute, 50139 - Florence, Italy.
Andrea GalliDepartment of Experimental and Clinical Biomedical Sciences, University of Florence, 50139 - Florence, Italy.
Marco E M PelusoCancer Risk Factor Branch, Cancer Prevention Laboratory, ISPO-Cancer Prevention and Research Institute, 50139 Florence, Italy m.peluso@ispo.toscana.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The next-generation sequencing studies of breast cancer have reported that the tumour suppressor P53 (TP53) gene is mutated in more than 40% of the tumours. We studied the levels of oxidative lesions, including 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-oxodG), along the coding strand of the exon 5 in breast cancer patients as well as in a reactive oxygen species (ROS)-attacked breast cancer cell line using the ligation-mediated polymerase chain reaction technique. We detected a significant 'in vitro' generation of 8-oxodG between the codons 163 and 175, corresponding to a TP53 region with high mutation prevalence, after treatment with xanthine plus xanthine oxidase, a ROS-generating system. Then, we evaluated the occurrence of oxidative lesions in the DNA-binding domain of the TP53 in the core needle biopsies of 113 of women undergoing breast investigation for diagnostic purpose. An increment of oxidative damage at the -G- residues into the codons 163 and 175 was found in the cancer cases as compared to the controls. We found significant associations with the pathological stage and the histological grade of tumours. As the major news of this study, this largest analysis of genomic footprinting of oxidative lesions at the TP53 sequence level to date provided a first roadmap describing the signatures of oxidative lesions in human breast cancer. Our results provide evidence that the generation of oxidative lesions at single nucleotide resolution is not an event highly stochastic, but causes a characteristic pattern of DNA lesions at the site of mutations in the TP53, suggesting causal relationship between oxidative DNA adducts and breast cancer.

Indexed as

ExonsAdultAgedBreast NeoplasmsCase-Control StudiesCell Line, TumorCodonDNA AdductsDNA, NeoplasmFemaleGuanosine MonophosphateHumansMiddle AgedOxidative StressPoint MutationTumor Suppressor Protein p538-oxo-7,8-dihydro-2'-deoxyguanosine-5'-monophosphateCodonDNA AdductsDNA, NeoplasmGuanosine MonophosphateTP53 protein, humanTumor Suppressor Protein p53breast cancerexon 5oxidative DNA lesionspTTP53

Identifiers

PMID27260513
PMCPMC4991831

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.