Evidence map›Paper›PMID 27260263›Full record

ArticleInternational journal of systematic and evolutionary microbiology2016

Pyrodictium delaneyi sp. nov., a hyperthermophilic autotrophic archaeon that reduces Fe(III) oxide and nitrate.

T Jennifer Lin, Gabriel El Sebae, Jong-Hyun Jung, Dong-Hyun Jung, Cheon-Seok Park, James F Holden

Abstract read
In one paragraph

Article in International journal of systematic and evolutionary microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  7. Microorganisms from deep-sea hydrothermal vents.Marine life science & technology · 2021
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. The draft genome of the hyperthermophilic archaeonStandards in genomic sciences · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

T Jennifer LinDepartment of Microbiology, University of Massachusetts, Amherst, MA 01003, USA.
Gabriel El SebaeDepartment of Microbiology, University of Massachusetts, Amherst, MA 01003, USA.
Jong-Hyun JungResearch Division for Biotechnology, Korea Atomic Energy Research Institute, Jeongeup 580-185, Republic of Korea.
Dong-Hyun JungGraduate School of Biotechnology, Institute of Life Science and Resources, Kyung Hee University, Yongin 446-701, Republic of Korea.
Cheon-Seok ParkGraduate School of Biotechnology, Institute of Life Science and Resources, Kyung Hee University, Yongin 446-701, Republic of Korea.
James F HoldenDepartment of Microbiology, University of Massachusetts, Amherst, MA 01003, USA.
University of Massachusetts Amherst · USKyung Hee University · KRKorea Atomic Energy Research Institute · KR

Funding

NASA NNX14AK25G
6 · The paper itself

Abstract

A hyperthermophilic, autotrophic iron and nitrate reducer, strain Su06T, was isolated from an active deep-sea hydrothermal vent chimney on the Endeavour Segment in the north-eastern Pacific Ocean. It was obligately anaerobic, hydrogenotrophic and reduced Fe(III) oxide to magnetite and NO3- to N2. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the strain was more than 97 % similar to other species of the genera Pyrodictium and Hyperthermus. Therefore, overall genome relatedness index analyses were performed to establish whether strain Su06T represents a novel species. For each analysis, strain Su06T was most similar to Pyrodictium occultum PL-19T. Relative to this strain, the average nucleotide identity score for strain Su06T was 72 %, the genome-to-genome direct comparison score was 13-19 % and the species identification score at the protein level was 89 %. For each analysis, strain Su06T was below the species delineation cutoff. Based on its whole genome sequence and its unique phenotypic characteristics, strain Su06T is suggested to represent a novel species of the genus Pyrodictium, for which the name Pyrodictium delaneyi is proposed. The type strain is Su06T (=DSM 28599T=ATCC BAA-2559T).

Indexed as

PhylogenyBase CompositionDNA, ArchaealFerric CompoundsFerrosoferric OxideHydrothermal VentsIronNitratesPacific OceanPyrodictiaceaeRNA, Ribosomal, 16SSeawaterSequence Analysis, DNADNA, ArchaealFerric Compoundsferric oxideFerrosoferric OxideIronNitratesRNA, Ribosomal, 16S

Identifiers

PMID27260263
PMCPMC6092747
OpenAlexW2408857641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.