Evidence map›Paper›PMID 27259294›Full record

ArticleJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry2016

Unanticipated coordination of tris buffer to the Radical SAM cluster of the RimO methylthiotransferase.

Thibaut Molle, Martin Clémancey, Jean-Marc Latour, Velavan Kathirvelu, Giuseppe Sicoli, Farhad Forouhar, Etienne Mulliez, Serge Gambarelli, Mohamed Atta

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In one paragraph

Article in Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. First Step in Catalysis of the RadicalJournal of the American Chemical Society · 2020
    Article
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Thibaut MolleLaboratoire de Chimie et Biologie des Métaux, team "Biocatalyse", Biosciences and Biotechnology Institute of Grenoble (BIG), BIG-LCBM/Biocat, UMR 5249 CEA/CNRS/UGA, CEA/Grenoble, 17, rue des Martyrs, Grenoble, France.
Martin ClémanceyLaboratoire de Chimie et Biologie des Métaux, team "Physicochimie des Métaux en Biologie" Biosciences and Biotechnology Institute of Grenoble (BIG), BIG-LCBM/PMB, UMR 5249 CEA/CNRS/UGA, CEA/Grenoble, 17, rue des Martyrs, Grenoble, France.
Jean-Marc LatourLaboratoire de Chimie et Biologie des Métaux, team "Physicochimie des Métaux en Biologie" Biosciences and Biotechnology Institute of Grenoble (BIG), BIG-LCBM/PMB, UMR 5249 CEA/CNRS/UGA, CEA/Grenoble, 17, rue des Martyrs, Grenoble, France.
Velavan KathirveluUniversity Grenoble Alpes, INAC, SCIB/LRM, 38000, Grenoble, France.
Giuseppe SicoliUniversity Grenoble Alpes, INAC, SCIB/LRM, 38000, Grenoble, France.
Farhad ForouharDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY, 10027, USA.
Etienne MulliezLaboratoire de Chimie et Biologie des Métaux, team "Biocatalyse", Biosciences and Biotechnology Institute of Grenoble (BIG), BIG-LCBM/Biocat, UMR 5249 CEA/CNRS/UGA, CEA/Grenoble, 17, rue des Martyrs, Grenoble, France. etienne.mulliez@cea.fr.
Serge GambarelliUniversity Grenoble Alpes, INAC, SCIB/LRM, 38000, Grenoble, France. serge.gambarelli@cea.fr.
Mohamed AttaLaboratoire de Chimie et Biologie des Métaux, team "Biocatalyse", Biosciences and Biotechnology Institute of Grenoble (BIG), BIG-LCBM/Biocat, UMR 5249 CEA/CNRS/UGA, CEA/Grenoble, 17, rue des Martyrs, Grenoble, France. mohamed.atta@cea.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Radical SAM enzymes generally contain a [4Fe-4S](2+/1+) (RS cluster) cluster bound to the protein via the three cysteines of a canonical motif CxxxCxxC. The non-cysteinyl iron is used to coordinate SAM via its amino-carboxylate moiety. The coordination-induced proximity between the cluster acting as an electron donor and the adenosyl-sulfonium bond of SAM allows for the homolytic cleavage of the latter leading to the formation of the reactive 5'-deoxyadenosyl radical used for substrate activation. Most of the structures of Radical SAM enzymes have been obtained in the presence of SAM, and therefore, little is known about the situation when SAM is not present. In this report, we show that RimO, a methylthiotransferase belonging to the radical SAM superfamily, binds a Tris molecule in the absence of SAM leading to specific spectroscopic signatures both in Mössbauer and pulsed EPR spectroscopies. These data provide a cautionary note for researchers who work with coordinative unsaturated iron sulfur clusters.

Indexed as

BuffersS-AdenosylmethionineSulfurtransferasesThermotoga maritimaTromethamineBuffersS-AdenosylmethionineSulfurtransferasesTromethamineBiosynthesisCofactorElectron paramagnetic resonanceIron–sulfur clusterLigand bindingMössbauer spectroscopyPulsed EPR

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.