Evidence map›Paper›PMID 27258950›Full record

ArticleThe ISME journal2016

Prophages mediate defense against phage infection through diverse mechanisms.

Joseph Bondy-Denomy, Jason Qian, Edze R Westra, Angus Buckling, David S Guttman, Alan R Davidson, Karen L Maxwell

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 311 papers.

0numbers the graph read from it
0cells of the map it votes in
311citing papers in PubMed
21.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

311 citing papers in PubMed, 525 citations in OpenAlex.

  1. Revisiting the life cycle of temperate phages.Nature reviews. Microbiology · 2026
    Review
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  13. mBio · 2026
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  14. Complete genome sequence ofMicrobiology resource announcements · 2026
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  18. Isolation and characterization of broad-rangeMicrobiology (Reading, England) · 2026
    Article
  19. Article
  20. Article

251 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Joseph Bondy-DenomyDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Jason QianDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Edze R WestraEnvironment and Sustainability Institute, Biosciences, University of Exeter, Penryn, UK.
Angus BucklingEnvironment and Sustainability Institute, Biosciences, University of Exeter, Penryn, UK.
David S GuttmanCentre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, ON, Canada.
Alan R DavidsonDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Karen L MaxwellDonnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada.
University of Toronto · CASustainability Institute · ZACellular Research (United States) · US

Funding

Construction Of A Reference Sequence Data Set For The Human Microbiome ProjectU54AI084844 · NIAID · J. CRAIG VENTER INSTITUTE, INC. · PI NELSON, KAREN E. · 2009 to 2012
$10.3M
Biotechnology and Biological Sciences Research CouncilCIHR MOP-136845CIHR XNE-86943NIAID NIH HHS U54 AI084844Wellcome Trust
6 · The paper itself

Abstract

The activity of bacteriophages poses a major threat to bacterial survival. Upon infection, a temperate phage can either kill the host cell or be maintained as a prophage. In this state, the bacteria carrying the prophage is at risk of superinfection, where another phage injects its genetic material and competes for host cell resources. To avoid this, many phages have evolved mechanisms that alter the bacteria and make it resistant to phage superinfection. The mechanisms underlying these phentoypic conversions and the fitness consequences for the host are poorly understood, and systematic studies of superinfection exclusion mechanisms are lacking. In this study, we examined a wide range of Pseudomonas aeruginosa phages and found that they mediate superinfection exclusion through a variety of mechanisms, some of which affected the type IV pilus and O-antigen, and others that functioned inside the cell. The strongest resistance mechanism was a surface modification that we showed is cost-free for the bacterial host in a natural soil environment and in a Caenorhabditis. elegans infection model. This study represents the first systematic approach to address how a population of prophages influences phage resistance and bacterial behavior in P. aeruginosa.

Indexed as

Bacterial ProteinsBacteriophagesFimbriae, BacterialProphagesPseudomonas aeruginosaBacterial Proteins

Identifiers

PMID27258950
PMCPMC5148200
OpenAlexW2417593230

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.