Evidence map›Paper›PMID 27258536›Full record

ArticlePloS one2016

Amino Acid and Secondary Metabolite Production in Embryogenic and Non-Embryogenic Callus of Fingerroot Ginger (Boesenbergia rotunda).

Theresa Lee Mei Ng, Rezaul Karim, Yew Seong Tan, Huey Fang Teh, Asma Dazni Danial, Li Sim Ho, Norzulaani Khalid, David Ross Appleton, Jennifer Ann Harikrishna

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 52 citations in OpenAlex.

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  8. Anticancer Activity of Natural and Synthetic Chalcones.International journal of molecular sciences · 2021
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  10. Expression and DNA methylation ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Theresa Lee Mei NgCentre for Research in Biotechnology for Agriculture & Institute of Biological Sciences, Faculty Science, University of Malaya, 50603 Kuala Lumpur, Malaysia.
Rezaul KarimCentre for Research in Biotechnology for Agriculture & Institute of Biological Sciences, Faculty Science, University of Malaya, 50603 Kuala Lumpur, Malaysia.
Yew Seong TanCentre for Research in Biotechnology for Agriculture & Institute of Biological Sciences, Faculty Science, University of Malaya, 50603 Kuala Lumpur, Malaysia.
Huey Fang TehSime Darby Technology Centre, 1st Floor Block B, UPM-MTDC Technology Centre III, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Asma Dazni DanialSime Darby Technology Centre, 1st Floor Block B, UPM-MTDC Technology Centre III, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Li Sim HoSime Darby Technology Centre, 1st Floor Block B, UPM-MTDC Technology Centre III, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Norzulaani KhalidCentre for Research in Biotechnology for Agriculture & Institute of Biological Sciences, Faculty Science, University of Malaya, 50603 Kuala Lumpur, Malaysia.
David Ross AppletonSime Darby Technology Centre, 1st Floor Block B, UPM-MTDC Technology Centre III, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Jennifer Ann HarikrishnaCentre for Research in Biotechnology for Agriculture & Institute of Biological Sciences, Faculty Science, University of Malaya, 50603 Kuala Lumpur, Malaysia.
Universiti Putra Malaysia · MYUniversity of Malaya · MYUniversity of Rajshahi · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interest in the medicinal properties of secondary metabolites of Boesenbergia rotunda (fingerroot ginger) has led to investigations into tissue culture of this plant. In this study, we profiled its primary and secondary metabolites, as well as hormones of embryogenic and non-embryogenic (dry and watery) callus and shoot base, Ultra Performance Liquid Chromatography-Mass Spectrometry together with histological characterization. Metabolite profiling showed relatively higher levels of glutamine, arginine and lysine in embryogenic callus than in dry and watery calli, while shoot base tissue showed an intermediate level of primary metabolites. For the five secondary metabolites analyzed (ie. panduratin, pinocembrin, pinostrobin, cardamonin and alpinetin), shoot base had the highest concentrations, followed by watery, dry and embryogenic calli. Furthermore, intracellular auxin levels were found to decrease from dry to watery calli, followed by shoot base and finally embryogenic calli. Our morphological observations showed the presence of fibrils on the cell surface of embryogenic callus while diphenylboric acid 2-aminoethylester staining indicated the presence of flavonoids in both dry and embryogenic calli. Periodic acid-Schiff staining showed that shoot base and dry and embryogenic calli contained starch reserves while none were found in watery callus. This study identified several primary metabolites that could be used as markers of embryogenic cells in B. rotunda, while secondary metabolite analysis indicated that biosynthesis pathways of these important metabolites may not be active in callus and embryogenic tissue.

Indexed as

Amino AcidsBoron CompoundsChromatography, High Pressure LiquidCulture MediaEstersIndoleacetic AcidsMass SpectrometryMetabolomePlant ShootsPrincipal Component AnalysisTissue Culture TechniquesZingiber officinaleAmino AcidsBoron CompoundsCulture MediadiphenylborateEstersIndoleacetic Acids

Identifiers

PMID27258536
PMCPMC4892522
OpenAlexW2418760969

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.