Evidence map›Paper›PMID 27258289›Full record

ArticleMarine drugs2016

Biosynthetic Functional Gene Analysis of Bis-Indole Metabolites from 25D7, a Clone Derived from a Deep-Sea Sediment Metagenomic Library.

Xia Yan, Xi-Xiang Tang, Dan Qin, Zhi-Wei Yi, Mei-Juan Fang, Zhen Wu, Ying-Kun Qiu

Abstract read
In one paragraph

Article in Marine drugs, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xia YanSchool of Pharmaceutical Sciences, Xiamen University, South Xiang-An Road, Xiamen 361102, China. yanxia1201@126.com.
Xi-Xiang TangKey Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography State Oceanic Administration, Xiamen 361005, China. tangxixiang@tio.org.cn.
Dan QinKey Laboratory of Urban Pollutant Conversion, Institute of Urbane Environment, Chinese Academy of Sciences, Xiamen 361021, China. dqin@iue.ac.cn.
Zhi-Wei YiKey Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography State Oceanic Administration, Xiamen 361005, China. yizhiwei@tio.org.cn.
Mei-Juan FangSchool of Pharmaceutical Sciences, Xiamen University, South Xiang-An Road, Xiamen 361102, China. fangmj@xmu.edu.cn.
Zhen WuSchool of Pharmaceutical Sciences, Xiamen University, South Xiang-An Road, Xiamen 361102, China. wuzhen@xmu.edu.cn.
Ying-Kun QiuSchool of Pharmaceutical Sciences, Xiamen University, South Xiang-An Road, Xiamen 361102, China. qyk@xmu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This work investigated the metabolites and their biosynthetic functional hydroxylase genes of the deep-sea sediment metagenomic clone 25D7. 5-Bromoindole was added to the 25D7 clone derived Escherichia coli fermentation broth. The new-generated metabolites and their biosynthetic byproducts were located through LC-MS, in which the isotope peaks of brominated products emerged. Two new brominated bis-indole metabolites, 5-bromometagenediindole B (1), and 5-bromometagenediindole C (2) were separated under the guidance of LC-MS. Their structures were elucidated on the basis of 1D and 2D NMR spectra (COSY, HSQC, and HMBC). The biosynthetic functional genes of the two new compounds were revealed through LC-MS and transposon mutagenesis analysis. 5-Bromometagenediindole B (1) also demonstrated moderately cytotoxic activity against MCF7, B16, CNE2, Bel7402, and HT1080 tumor cell lines in vitro.

Indexed as

Cell Line, TumorEscherichia coliFermentationGeologic SedimentsHumansIndolesMagnetic Resonance SpectroscopyMCF-7 CellsMelanoma, ExperimentalMetagenomicsOceans and SeasindoleIndolesbiosynthetic functional genescytotoxicitydeep-sea sedimentdiindole derivativesmetagenomic clonesecondary metabolites

Identifiers

PMID27258289
PMCPMC4926066

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.