Evidence map›Paper›PMID 27258092›Full record

ArticlePloS one2016

Clear Plaque Mutants of Lactococcal Phage TP901-1.

Witold Kot, Mogens Kilstrup, Finn K Vogensen, Karin Hammer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Witold KotDepartment of Environmental Science, Aarhus University, Frederiksborgvej 399, DK-4000, Roskilde, Denmark.
Mogens KilstrupDepartment of Systems Biology, The Technical University of Denmark, Matematiktorvet Building 301, DK-2800, Lyngby, Denmark.
Finn K VogensenDepartment of Food Science, University of Copenhagen, Rolighedsvej 26, DK-1958, Frederiksberg C, Denmark.
Karin HammerDepartment of Systems Biology, The Technical University of Denmark, Matematiktorvet Building 301, DK-2800, Lyngby, Denmark.
Technical University of Denmark · DKAarhus University · DKUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report a method for obtaining turbid plaques of the lactococcal bacteriophage TP901-1 and its derivative TP901-BC1034. We have further used the method to isolate clear plaque mutants of this phage. Analysis of 8 such mutants that were unable to lysogenize the host included whole genome resequencing. Four of the mutants had different mutations in structural genes with no relation to the genetic switch. However all 8 mutants had a mutation in the cI repressor gene region. Three of these were located in the promoter and Shine-Dalgarno sequences and five in the N-terminal part of the encoded CI protein involved in the DNA binding. The conclusion is that cI is the only gene involved in clear plaque formation i.e. the CI protein is the determining factor for the lysogenic pathway and its maintenance in the lactococcal phage TP901-1.

Indexed as

DNA, ViralMutationBacteriophagesLactococcusPromoter Regions, GeneticViral ProteinsDNA, ViralViral Proteins

Identifiers

PMID27258092
PMCPMC4892519
OpenAlexW2419255051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.