Evidence map›Paper›PMID 27256139›Full record

ArticleBiochemical pharmacology2016

Interactions between amiodarone and the hERG potassium channel pore determined with mutagenesis and in silico docking.

Yihong Zhang, Charlotte K Colenso, Aziza El Harchi, Hongwei Cheng, Harry J Witchel, Chris E Dempsey, Jules C Hancox

Open access · hybridAbstract read
In one paragraph

Article in Biochemical pharmacology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. A hERG Blocker Facilitates KbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. PersonalizedFrontiers in physiology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Harnessing AlphaFold to reveal hERG channel conformational state secrets.bioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. New Insights into Ion Channels: Predicting hERG-Drug Interactions.International journal of molecular sciences · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Frontiers in cardiovascular medicine · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yihong ZhangSchool of Physiology and Pharmacology and Cardiovascular Research Laboratories, Medical Sciences Building, University of Bristol, University Walk, Bristol BS8 1TD, UK.
Charlotte K ColensoSchool of Biochemistry, Medical Sciences Building, University of Bristol, University Walk, Bristol BS8 1TD, UK.
Aziza El HarchiSchool of Physiology and Pharmacology and Cardiovascular Research Laboratories, Medical Sciences Building, University of Bristol, University Walk, Bristol BS8 1TD, UK.
Hongwei ChengSchool of Physiology and Pharmacology and Cardiovascular Research Laboratories, Medical Sciences Building, University of Bristol, University Walk, Bristol BS8 1TD, UK.
Harry J WitchelBrighton and Sussex Medical School, University of Sussex, Falmer BN1 9PX, UK.
Chris E DempseySchool of Biochemistry, Medical Sciences Building, University of Bristol, University Walk, Bristol BS8 1TD, UK. Electronic address: C.Dempsey@bristol.ac.uk.
Jules C HancoxSchool of Physiology and Pharmacology and Cardiovascular Research Laboratories, Medical Sciences Building, University of Bristol, University Walk, Bristol BS8 1TD, UK. Electronic address: Jules.hancox@bristol.ac.uk.
University of Bristol · GBBrighton and Sussex Medical School · GB

Funding

British Heart Foundation PG/06/42British Heart Foundation PG/10/96/28661British Heart Foundation PG/12/69/29784British Heart Foundation PG/14/61/31015
6 · The paper itself

Abstract

The antiarrhythmic drug amiodarone delays cardiac repolarisation through inhibition of hERG-encoded potassium channels responsible for the rapid delayed rectifier potassium current (IKr). This study aimed to elucidate molecular determinants of amiodarone binding to the hERG channel. Whole-cell patch-clamp recordings were made at 37°C of ionic current (IhERG) carried by wild-type (WT) or mutant hERG channels expressed in HEK293 cells. Alanine mutagenesis and ligand docking were used to investigate the roles of pore cavity amino-acid residues in amiodarone binding. Amiodarone inhibited WT outward IhERG tails with a half-maximal inhibitory concentration (IC50) of ∼45nM, whilst inward IhERG tails in a high K(+) external solution ([K(+)]e) of 94mM were blocked with an IC50 of 117.8nM. Amiodarone's inhibitory action was contingent upon channel gating. Alanine-mutagenesis identified multiple residues directly or indirectly involved in amiodarone binding. The IC50 for the S6 aromatic Y652A mutation was increased to ∼20-fold that of WT IhERG, similar to the pore helical mutant S624A (∼22-fold WT control). The IC50 for F656A mutant IhERG was ∼17-fold its corresponding WT control. Computational docking using a MthK-based hERG model differentiated residues likely to interact directly with drug and those whose Ala mutation may affect drug block allosterically. The requirements for amiodarone block of aromatic residues F656 and Y652 within the hERG pore cavity are smaller than for other high affinity IhERG inhibitors, with relative importance to amiodarone binding of the residues investigated being S624A∼Y652A>F656A>V659A>G648A>T623A.

Indexed as

Action PotentialsAlanineAmino Acid SequenceAmiodaroneAnti-Arrhythmia AgentsDose-Response Relationship, DrugERG1 Potassium ChannelHEK293 CellsHumansMolecular Docking SimulationMutagenesisMutationPatch-Clamp TechniquesProtein BindingTransfectionAlanineAmiodaroneAnti-Arrhythmia AgentsERG1 Potassium ChannelKCNH2 protein, humanAmiodaroneAmiodarone hydrochloride (PubChem CID: 441325)AntiarrhythmichERGI(Kr)Long QTQT interval

Identifiers

PMID27256139
PMCPMC4959829
OpenAlexW2409520790

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.