Evidence map›Paper›PMID 27255426›Full record

ArticleScientific reports2016

Whole-genome resequencing of honeybee drones to detect genomic selection in a population managed for royal jelly.

David Wragg, Maria Marti-Marimon, Benjamin Basso, Jean-Pierre Bidanel, Emmanuelle Labarthe, Olivier Bouchez, Yves Le Conte, Alain Vignal

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

David WraggGenPhySE, Université de Toulouse, INRA, INPT, INP-ENVT, 31326 Castanet Tolosan, France.
Maria Marti-MarimonGenPhySE, Université de Toulouse, INRA, INPT, INP-ENVT, 31326 Castanet Tolosan, France.
Benjamin BassoInstitut de l'abeille (ITSAP), UMT PrADE, 8914 Avignon, France.
Jean-Pierre BidanelGABI, INRA, AgroParisTech, Université Paris-Saclay, 78352 Jouy-en-Josas, France.
Emmanuelle LabartheGenPhySE, Université de Toulouse, INRA, INPT, INP-ENVT, 31326 Castanet Tolosan, France.
Olivier BouchezGenPhySE, Université de Toulouse, INRA, INPT, INP-ENVT, 31326 Castanet Tolosan, France.
Yves Le ConteINRA, UR 406 Abeilles et Environnement, UMT PrADE, 84914 Avignon, France.
Alain VignalGenPhySE, Université de Toulouse, INRA, INPT, INP-ENVT, 31326 Castanet Tolosan, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Four main evolutionary lineages of A. mellifera have been described including eastern Europe (C) and western and northern Europe (M). Many apiculturists prefer bees from the C lineage due to their docility and high productivity. In France, the routine importation of bees from the C lineage has resulted in the widespread admixture of bees from the M lineage. The haplodiploid nature of the honeybee Apis mellifera, and its small genome size, permits affordable and extensive genomics studies. As a pilot study of a larger project to characterise French honeybee populations, we sequenced 60 drones sampled from two commercial populations managed for the production of honey and royal jelly. Results indicate a C lineage origin, whilst mitochondrial analysis suggests two drones originated from the O lineage. Analysis of heterozygous SNPs identified potential copy number variants near to genes encoding odorant binding proteins and several cytochrome P450 genes. Signatures of selection were detected using the hapFLK haplotype-based method, revealing several regions under putative selection for royal jelly production. The framework developed during this study will be applied to a broader sampling regime, allowing the genetic diversity of French honeybees to be characterised in detail.

Indexed as

Genome, InsectPolymorphism, Single NucleotideAnimalsBeesFatty AcidsGenetics, PopulationGenome SizeHaploidyPilot ProjectsRoyal JellySelection, GeneticWhole Genome SequencingFatty AcidsRoyal Jelly

Identifiers

PMID27255426
PMCPMC4891733

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.