Evidence map›Paper›PMID 27254021›Full record

ArticlePLoS genetics2016

Endogenous Mouse Dicer Is an Exclusively Cytoplasmic Protein.

Christian Much, Tania Auchynnikava, Dinko Pavlinic, Andreas Buness, Juri Rappsilber, Vladimir Benes, Robin Allshire, Dónal O'Carroll

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

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  9. Alcohol induces mitochondrial fragmentation and stress responses to maintain normal muscle function in Caenorhabditis elegans.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
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  17. MicroRNA in Control of Gene Expression: An Overview of Nuclear Functions.International journal of molecular sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Christian MuchMouse Biology Unit, European Molecular Biology Laboratory (EMBL), Monterotondo, Italy.
Tania AuchynnikavaWellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, Scotland, United Kingdom.ORCID 0000-0002-7748-2939
Dinko PavlinicGenomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Andreas BunessMouse Biology Unit, European Molecular Biology Laboratory (EMBL), Monterotondo, Italy.
Juri RappsilberWellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, Scotland, United Kingdom.
Vladimir BenesGenomics Core Facility, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Robin AllshireWellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, Scotland, United Kingdom.
Dónal O'CarrollMouse Biology Unit, European Molecular Biology Laboratory (EMBL), Monterotondo, Italy.
Wellcome Centre for Cell Biology · GBEuropean Molecular Biology Laboratory · DEMRC Centre for Regenerative Medicine · GBEuropean Molecular Biology Laboratory · IT

Funding

Wellcome Trust 103139/Z/13/Z
6 · The paper itself

Abstract

Dicer is a large multi-domain protein responsible for the ultimate step of microRNA and short-interfering RNA biogenesis. In human and mouse cell lines, Dicer has been shown to be important in the nuclear clearance of dsRNA as well as the establishment of chromatin modifications. Here we set out to unambiguously define the cellular localization of Dicer in mice to understand if this is a conserved feature of mammalian Dicer in vivo. To this end, we utilized an endogenously epitope tagged Dicer knock-in mouse allele. From primary mouse cell lines and adult tissues, we determined with certainty by biochemical fractionation and confocal immunofluorescence microscopy that endogenous Dicer is exclusively cytoplasmic. We ruled out the possibility that a fraction of Dicer shuttles to and from the nucleus as well as that FGF or DNA damage signaling induce Dicer nuclear translocation. We also explored Dicer localization during the dynamic and developmental context of embryogenesis, where Dicer is ubiquitously expressed and strictly cytoplasmic in all three germ layers as well as extraembryonic tissues. Our data exclude a direct role for Dicer in the nuclear RNA processing in the mouse.

Indexed as

AnimalsCell LineCell NucleusCytoplasmDEAD-box RNA HelicasesDNA DamageMiceMicroRNAsRibonuclease IIIRNA, Double-StrandedRNA, Small InterferingDEAD-box RNA HelicasesDicer1 protein, mouseMicroRNAsRibonuclease IIIRNA, Double-StrandedRNA, Small Interfering

Identifiers

PMID27254021
PMCPMC4890738
OpenAlexW2414451659

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.