Evidence map›Paper›PMID 27253068›Full record

ArticleeLife2016

Primate TRIM5 proteins form hexagonal nets on HIV-1 capsids.

Yen-Li Li, Viswanathan Chandrasekaran, Stephen D Carter, Cora L Woodward, Devin E Christensen, Kelly A Dryden, Owen Pornillos, Mark Yeager, Barbie K Ganser-Pornillos, Grant J Jensen and 1 more

Abstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Cyclophilin A Regulates Tripartite Motif 5 Alpha Restriction of HIV-1.International journal of molecular sciences · 2025
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Cryo-electron tomography to study viral infection.Biochemical Society transactions · 2023
    Review
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Yen-Li LiDepartment of Biochemistry, University of Utah, Salt Lake City, United States.
Viswanathan ChandrasekaranDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0002-0871-4740
Stephen D CarterDivision of Biology, California Institute of Technology, Pasadena, United States.
Cora L WoodwardDivision of Biology, California Institute of Technology, Pasadena, United States.
Devin E ChristensenDepartment of Biochemistry, University of Utah, Salt Lake City, United States.
Kelly A DrydenDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, United States.
Owen PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, United States.ORCID 0000-0001-9056-5002
Mark YeagerDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, United States.
Barbie K Ganser-PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, United States.
Grant J JensenDivision of Biology, California Institute of Technology, Pasadena, United States.ORCID 0000-0002-7095-3507
Wesley I SundquistDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0001-9988-6021

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Structure Analysis of Viral Assembly MechanismsR01GM066087 · NIGMS · UNIVERSITY OF VIRGINIA · PI YEAGER, MARK JAY · 2003 to 2014
$4.4M
Molecular Electron Microscopy Core Facility ImprovementsG20RR031199 · NCRR · UNIVERSITY OF VIRGINIA · PI SHUPNIK, MARGARET A · 2010 to 2010
$2.0M
Structural Virology of Tripartite Motif ProteinsR01GM112508 · NIGMS · UNIVERSITY OF VIRGINIA · PI PORNILLOS, OWEN · 2014 to 2018
$1.6M
NCRR NIH HHS G20 RR031199NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R01 GM066087NIGMS NIH HHS R01 GM112508
6 · The paper itself

Abstract

TRIM5 proteins are restriction factors that block retroviral infections by binding viral capsids and preventing reverse transcription. Capsid recognition is mediated by C-terminal domains on TRIM5α (SPRY) or TRIMCyp (cyclophilin A), which interact weakly with capsids. Efficient capsid recognition also requires the conserved N-terminal tripartite motifs (TRIM), which mediate oligomerization and create avidity effects. To characterize how TRIM5 proteins recognize viral capsids, we developed methods for isolating native recombinant TRIM5 proteins and purifying stable HIV-1 capsids. Biochemical and EM analyses revealed that TRIM5 proteins assembled into hexagonal nets, both alone and on capsid surfaces. These nets comprised open hexameric rings, with the SPRY domains centered on the edges and the B-box and RING domains at the vertices. Thus, the principles of hexagonal TRIM5 assembly and capsid pattern recognition are conserved across primates, allowing TRIM5 assemblies to maintain the conformational plasticity necessary to recognize divergent and pleomorphic retroviral capsids.

Indexed as

AnimalsCapsidCarrier ProteinsCrystallography, X-RayDimerizationGene Expression RegulationHEK293 CellsHIV-1HumansPrimatesProtein ConformationRecombinant Fusion ProteinsCarrier ProteinsRecombinant Fusion Proteinscapsidhexagonal assemblyHIV-1humanimmunologyinfectious diseasemicrobiologyrestrictionTRIM5virus

Identifiers

PMID27253068
PMCPMC4936896

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.