Evidence map›Paper›PMID 27253061›Full record

ArticleeLife2016

CELF RNA binding proteins promote axon regeneration in C. elegans and mammals through alternative splicing of Syntaxins.

Lizhen Chen, Zhijie Liu, Bing Zhou, Chaoliang Wei, Yu Zhou, Michael G Rosenfeld, Xiang-Dong Fu, Andrew D Chisholm, Yishi Jin

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 41 citations in OpenAlex.

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  17. Review
  18. Alternative splicing programming of axon formation.Wiley interdisciplinary reviews. RNA · 2020
    Review
  19. Molecular basis of the functions of the mammalian neuronal growth cone revealed using new methods.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2019
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Lizhen ChenSection of Neurobiology, University of California, San Diego, Division of Biological Sciences, San Diego, United States.ORCID 0000-0001-5313-7340
Zhijie LiuDepartment of Medicine, University of California, San Diego, School of Medicine, San Diego, United States.
Bing ZhouDepartment of Cellular and Molecular Medicine, University of California, San Diego, School of Medicine, San Diego, United States.ORCID 0000-0003-2846-1813
Chaoliang WeiDepartment of Cellular and Molecular Medicine, University of California, San Diego, School of Medicine, San Diego, United States.
Yu ZhouDepartment of Cellular and Molecular Medicine, University of California, San Diego, School of Medicine, San Diego, United States.
Michael G RosenfeldHoward Hughes Medical Institute, University of California, San Diego, United States.
Xiang-Dong FuDepartment of Cellular and Molecular Medicine, University of California, San Diego, School of Medicine, San Diego, United States.
Andrew D ChisholmSection of Neurobiology, University of California, San Diego, Division of Biological Sciences, San Diego, United States.ORCID 0000-0001-5091-0537
Yishi JinSection of Neurobiology, University of California, San Diego, Division of Biological Sciences, San Diego, United States.ORCID 0000-0002-9371-9860
University of California San Diego · USHoward Hughes Medical Institute · USNational Institutes of Health · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jesse Nodora · 1985 to 2026
$124.9M
Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
TRAINING IN THE NEUROPLASTICITY OF AGINGT32AG000216 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOO, EDWARD H. · 1992 to 2017
$8.4M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
FUNCTION &REGULATION OF THE HUMAN SPLICING FACTOR SC35R01GM049369 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FU, XIANG-DONG · 1993 to 2018
$7.2M
Cytoskeletal dynamics in axon regenerationR01NS093588 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHISHOLM, ANDREW D, JIN, YISHI · 2015 to 2023
$3.7M
Development of a C. elegans model for axonal regenerationR01NS057317 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHISHOLM, ANDREW D · 2009 to 2013
$1.5M
Development of a C.elegans model for axonal regenerationR56NS057317 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHISHOLM, ANDREW D, JIN, YISHI · 2014 to 2014
$388k
NCI NIH HHS P30 CA023100NHGRI NIH HHS R01 HG004659NIA NIH HHS T32 AG000216NIGMS NIH HHS R01 GM049369NIH HHS P40 OD010440NINDS NIH HHS R01 NS057317NINDS NIH HHS R01 NS093588NINDS NIH HHS R56 NS057317
6 · The paper itself

Abstract

Axon injury triggers dramatic changes in gene expression. While transcriptional regulation of injury-induced gene expression is widely studied, less is known about the roles of RNA binding proteins (RBPs) in post-transcriptional regulation during axon regeneration. In C. elegans the CELF (CUGBP and Etr-3 Like Factor) family RBP UNC-75 is required for axon regeneration. Using crosslinking immunoprecipitation coupled with deep sequencing (CLIP-seq) we identify a set of genes involved in synaptic transmission as mRNA targets of UNC-75. In particular, we show that UNC-75 regulates alternative splicing of two mRNA isoforms of the SNARE Syntaxin/unc-64. In C. elegans mutants lacking unc-75 or its targets, regenerating axons form growth cones, yet are deficient in extension. Extending these findings to mammalian axon regeneration, we show that mouse Celf2 expression is upregulated after peripheral nerve injury and that Celf2 mutant mice are defective in axon regeneration. Further, mRNAs for several Syntaxins show CELF2 dependent regulation. Our data delineate a post-transcriptional regulatory pathway with a conserved role in regenerative axon extension.

Indexed as

Alternative SplicingAnimalsAxonsCaenorhabditis elegansCaenorhabditis elegans ProteinsCELF ProteinsGene Expression RegulationLocomotionMiceMice, KnockoutMutationPeripheral Nerve InjuriesProtein IsoformsQa-SNARE ProteinsRegenerationRNA-Binding ProteinsCaenorhabditis elegans ProteinsCelf2 protein, mouseCELF ProteinsProtein IsoformsQa-SNARE ProteinsRNA-Binding ProteinsUNC-75 protein, C elegansC. elegansCUGBPDRGmouseneurite outgrowthneurosciencePNS regenerationpost-transcriptional regulationUNC-75

Identifiers

PMID27253061
PMCPMC4946901
OpenAlexW2413854329

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.