Evidence map›Paper›PMID 27253059›Full record

ArticleeLife2016

Mechanism of B-box 2 domain-mediated higher-order assembly of the retroviral restriction factor TRIM5α.

Jonathan M Wagner, Marcin D Roganowicz, Katarzyna Skorupka, Steven L Alam, Devin Christensen, Ginna Doss, Yueping Wan, Gabriel A Frank, Barbie K Ganser-Pornillos, Wesley I Sundquist and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed, 1 pooled it
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
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  6. Review
  7. Review
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  10. Viruses · 2025
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  20. PML Body Biogenesis: A Delicate Balance of Interactions.International journal of molecular sciences · 2023
    Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Jonathan M WagnerDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, United States.
Marcin D RoganowiczDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, United States.
Katarzyna SkorupkaDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, United States.
Steven L AlamDepartment of Biochemistry, University of Utah, Salt Lake City, United States.
Devin ChristensenDepartment of Biochemistry, University of Utah, Salt Lake City, United States.
Ginna DossDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, United States.
Yueping WanDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, United States.
Gabriel A FrankThe National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheeva, Israel.
Barbie K Ganser-PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, United States.
Wesley I SundquistDepartment of Biochemistry, University of Utah, Salt Lake City, United States.ORCID 0000-0001-9988-6021
Owen PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, United States.ORCID 0000-0001-9056-5002
University of Virginia · USUniversity of Utah · USBen-Gurion University of the Negev · IL

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Structural Virology of Tripartite Motif ProteinsR01GM112508 · NIGMS · UNIVERSITY OF VIRGINIA · PI PORNILLOS, OWEN · 2014 to 2018
$1.6M
Structural and Functional Integration of TRIM5alpha Domains for HIV Capsid BindingF32GM115007 · NIGMS · UNIVERSITY OF VIRGINIA · PI WAGNER, JONATHAN MARK · 2015 to 2017
$173k
NIGMS NIH HHS F32 GM115007NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R01 GM112508
6 · The paper itself

Abstract

Restriction factors and pattern recognition receptors are important components of intrinsic cellular defenses against viral infection. Mammalian TRIM5α proteins are restriction factors and receptors that target the capsid cores of retroviruses and activate ubiquitin-dependent antiviral responses upon capsid recognition. Here, we report crystallographic and functional studies of the TRIM5α B-box 2 domain, which mediates higher-order assembly of TRIM5 proteins. The B-box can form both dimers and trimers, and the trimers can link multiple TRIM5α proteins into a hexagonal net that matches the lattice arrangement of capsid subunits and enables avid capsid binding. Two modes of conformational flexibility allow TRIM5α to accommodate the variable curvature of retroviral capsids. B-box mediated interactions also modulate TRIM5α's E3 ubiquitin ligase activity, by stereochemically restricting how the N-terminal RING domain can dimerize. Overall, these studies define important molecular details of cellular recognition of retroviruses, and how recognition links to downstream processes to disable the virus.

Indexed as

AnimalsCapsidCarrier ProteinsCrystallography, X-RayMacaca mulattaModels, MolecularProtein ConformationProtein DomainsProtein MultimerizationRetroviridaeUbiquitinUbiquitinationCarrier ProteinsUbiquitinbiochemistrybiophysicshigher-order assemblyHIVprotein structurerestriction factorrhesus macaquestructural biology

Identifiers

PMID27253059
PMCPMC4936894
OpenAlexW2419339143

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.