Evidence map›Paper›PMID 27252729›Full record

ArticleFrontiers in plant science2016

Use of Agrobacterium rhizogenes Strain 18r12v and Paromomycin Selection for Transformation of Brachypodium distachyon and Brachypodium sylvaticum.

Ray Collier, Jennifer Bragg, Bryan T Hernandez, John P Vogel, Roger Thilmony

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Efficient CRISPR-mediated base editing inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Advancements in Low-Chill BlueberryPlants (Basel, Switzerland) · 2020
    Article
  4. In Vitro Tissue Culture inInternational journal of molecular sciences · 2020
    Review
  5. Optimization of Mature Embryo-Based Tissue Culture andInternational journal of molecular sciences · 2019
    Article
  6. The Plant cell · 2018
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Ray CollierCrop Improvement and Genetics Research Unit, Western Regional Research Center, United States Department of Agriculture-Agricultural Research Service, Albany CA, USA.
Jennifer BraggCrop Improvement and Genetics Research Unit, Western Regional Research Center, United States Department of Agriculture-Agricultural Research Service, Albany CA, USA.
Bryan T HernandezDepartment of Plant Sciences, University of California, Davis, Davis CA, USA.
John P VogelCrop Improvement and Genetics Research Unit, Western Regional Research Center, United States Department of Agriculture-Agricultural Research Service, AlbanyCA, USA; Department of Energy, Joint Genome Institute, Walnut CreekCA, USA.
Roger ThilmonyCrop Improvement and Genetics Research Unit, Western Regional Research Center, United States Department of Agriculture-Agricultural Research Service, Albany CA, USA.
Agricultural Research Service · USWestern Regional Research Center · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic transformation of monocot grasses is a resource intensive process, the quality and efficiency of which is dependent in part upon the method of DNA introduction, as well as the ability to effectively separate transformed from wildtype tissue. Agrobacterium-mediated transformation of Brachypodium has relied mainly on Agrobacterium tumefaciens strain AGL1. Currently the antibiotic hygromycin B has been the selective agent of choice for robust identification of transgenic calli in Brachypodium distachyon and Brachypodium sylvaticum but few other chemicals have been shown to work as well for selection of transgenic Brachypodium cells in tissue culture. This study demonstrates that Agrobacterium rhizogenes strain 18r12v and paromomycin selection can be successfully used for the efficient generation of transgenic B. distachyon and B. sylvaticum. Additionally we observed that the transformation rates were similar to or higher than those obtained with A. tumefaciens strain AGL1 and hygromycin selection. The A. rhizogenes strain 18r12v harboring the pARS1 binary vector and paromomycin selection is an effective means of generating transgenic Brachypodium plants. This novel approach will facilitate the transgenic complementation of T-DNA knockout mutants of B. distachyon which were created using hygromycin selection, as well as aid the implementation of more complex genome manipulation strategies which require multiple rounds of transformation.

Indexed as

Agrobacterium rhizogenesBrachypodiumcallusparomomycintissue culturetransformation

Identifiers

PMID27252729
PMCPMC4877385
OpenAlexW2403540493

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.