Evidence map›Paper›PMID 27252708›Full record

ArticleFrontiers in plant science2016

GintAMT3 - a Low-Affinity Ammonium Transporter of the Arbuscular Mycorrhizal Rhizophagus irregularis.

Silvia Calabrese, Jacob Pérez-Tienda, Matthias Ellerbeck, Christine Arnould, Odile Chatagnier, Thomas Boller, Arthur Schüßler, Andreas Brachmann, Daniel Wipf, Nuria Ferrol and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
15.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 81 citations in OpenAlex.

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  18. TheFrontiers in plant science · 2019
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  19. Improvement ofInternational journal of molecular sciences · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Silvia CalabreseDepartment of Environmental Sciences, Botany, Zurich-Basel Plant Science Center, University of Basel Basel, Switzerland.
Jacob Pérez-TiendaDepartamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas Granada, Spain.
Matthias EllerbeckFaculty of Biology, Genetics, Ludwig-Maximilians-University Munich Planegg-Martinsried, Germany.
Christine ArnouldAgroécologie, AgroSup Dijon, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Bourgogne Franche-Comté Dijon, France.
Odile ChatagnierAgroécologie, AgroSup Dijon, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Bourgogne Franche-Comté Dijon, France.
Thomas BollerDepartment of Environmental Sciences, Botany, Zurich-Basel Plant Science Center, University of Basel Basel, Switzerland.
Arthur SchüßlerFaculty of Biology, Genetics, Ludwig-Maximilians-University Munich Planegg-Martinsried, Germany.
Andreas BrachmannFaculty of Biology, Genetics, Ludwig-Maximilians-University Munich Planegg-Martinsried, Germany.
Daniel WipfAgroécologie, AgroSup Dijon, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Bourgogne Franche-Comté Dijon, France.
Nuria FerrolDepartamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas Granada, Spain.
Pierre-Emmanuel CourtyDepartment of Environmental Sciences, Botany, Zurich-Basel Plant Science Center, University of Basel Basel, Switzerland.
Ludwig-Maximilians-Universität München · DEUniversité de Bourgogne · FRUniversity of Basel · CHConsejo Superior de Investigaciones Científicas · ESEstación Experimental del Zaidín · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nutrient acquisition and transfer are essential steps in the arbuscular mycorrhizal (AM) symbiosis, which is formed by the majority of land plants. Mineral nutrients are taken up by AM fungi from the soil and transferred to the plant partner. Within the cortical plant root cells the fungal hyphae form tree-like structures (arbuscules) where the nutrients are released to the plant-fungal interface, i.e., to the periarbuscular space, before being taken up by the plant. In exchange, the AM fungi receive carbohydrates from the plant host. Besides the well-studied uptake of phosphorus (P), the uptake and transfer of nitrogen (N) plays a crucial role in this mutualistic interaction. In the AM fungus Rhizophagus irregularis (formerly called Glomus intraradices), two ammonium transporters (AMT) were previously described, namely GintAMT1 and GintAMT2. Here, we report the identification and characterization of a newly identified R. irregularis AMT, GintAMT3. Phylogenetic analyses revealed high sequence similarity to previously identified AM fungal AMTs and a clear separation from other fungal AMTs. Topological analysis indicated GintAMT3 to be a membrane bound pore forming protein, and GFP tagging showed it to be highly expressed in the intraradical mycelium of a fully established AM symbiosis. Expression of GintAMT3 in yeast successfully complemented the yeast AMT triple deletion mutant (MATa ura3 mep1Δ mep2Δ::LEU2 mep3Δ::KanMX2). GintAMT3 is characterized as a low affinity transport system with an apparent Km of 1.8 mM and a V max of 240 nmol(-1) min(-1) 10(8) cells(-1), which is regulated by substrate concentration and carbon supply.

Indexed as

ammonium transporterarbuscular mycorrhizal fungiextraradical myceliumintraradical myceliumlow affinity transporter

Identifiers

PMID27252708
PMCPMC4879785
OpenAlexW2397834110

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.