Evidence map›Paper›PMID 27252465›Full record

ArticleJournal of clinical microbiology2016

Phylogenetic Analysis of Enteroaggregative Escherichia coli (EAEC) Isolates from Japan Reveals Emergence of CTX-M-14-Producing EAEC O25:H4 Clones Related to Sequence Type 131.

Naoko Imuta, Tadasuke Ooka, Kazuko Seto, Ryuji Kawahara, Toyoyasu Koriyama, Tsuyoshi Kojyo, Atsushi Iguchi, Koichi Tokuda, Hideki Kawamura, Kiyotaka Yoshiie and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Plasmid-encoded toxin ofFrontiers in cellular and infection microbiology · 2024
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  5. Differential Expression ofInternational journal of microbiology · 2024
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  6. Genetic relatedness of third-generation cephalosporin-resistantOne health (Amsterdam, Netherlands) · 2023
    Article
  7. EnteroaggregativeFrontiers in microbiology · 2023
    Article
  8. Article
  9. Review
  10. EnteroaggregativePeerJ · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Whole genome sequencing reveals high clonal diversity ofAntimicrobial resistance and infection control · 2018
    Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Naoko ImutaDepartment of Microbiology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan.
Tadasuke OokaDepartment of Microbiology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan.
Kazuko SetoOsaka Prefectural Institute of Public Health, Osaka, Japan.
Ryuji KawaharaOsaka Prefectural Institute of Public Health, Osaka, Japan.
Toyoyasu KoriyamaClinical Laboratory, Kagoshima University Hospital, Kagoshima, Japan.
Tsuyoshi KojyoClinical Laboratory, Kagoshima University Hospital, Kagoshima, Japan.
Atsushi IguchiDepartment of Animal and Grassland Sciences, Faculty of Agriculture, University of Miyazaki, Miyazaki, Japan.
Koichi TokudaDepartment of Infection Control and Prevention, Division of Medical and Environmental Safety, Kagoshima University Hospital, Kagoshima, Japan.
Hideki KawamuraDepartment of Infection Control and Prevention, Division of Medical and Environmental Safety, Kagoshima University Hospital, Kagoshima, Japan.
Kiyotaka YoshiieDepartment of Microbiology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan.
Yoshitoshi OguraDepartment of Microbiology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Tetsuya HayashiDepartment of Microbiology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Junichiro NishiDepartment of Microbiology, Kagoshima University Graduate School of Medical and Dental Sciences, Kagoshima, Japan Department of Infection Control and Prevention, Division of Medical and Environmental Safety, Kagoshima University Hospital, Kagoshima, Japan nishi1@m2.kufm.kagoshima-u.ac.jp.
Kagoshima University · JPKagoshima University Hospital · JPKyushu University · JPOsaka Prefectural Institute of Public Health · JPUniversity of Miyazaki · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enteroaggregative Escherichia coli (EAEC) causes acute or persistent diarrhea. The aggR gene is widely used as a marker for typical EAEC. The heterogeneity of EAEC is well known; however, there are few reports on the phylogenetic relationships of EAEC. Recently, CTX-M extended-spectrum β-lactamase (ESBL)-producing EAEC strains have been reported worldwide. To characterize EAEC strains in Japan, we investigated the population structure of EAEC. A total of 167 aggR-positive strains isolated from stool specimens from diarrheal patients in Kagoshima (139 strains) and Osaka (28 strains), Japan, between 1992 and 2010 were examined for the prevalence of EAEC virulence markers, the blaCTX-M gene, and the capacity to form biofilms. Multilocus sequence typing was also conducted. EAEC strains were widely distributed across four major E. coli phylogroups. Strains of O111:H21/clonal group 40 (CG40) (30 strains), O126:H27/CG200 (13 strains), and O86a:H27/CG3570 (11 strains) in phylogroup B1 are the historical EAEC clones in Japan, and they exhibited strong biofilm formation. Twenty-nine strains of EAEC O25:H4/CG131 were identified in phylogroup B2, 79% of which produced CTX-M-14. This clone has emerged since 2003. The clone harbored plasmid-encoded EAEC virulence genes but not chromosomal virulence genes and had lower biofilm-forming capacity than historical EAEC strains. This clone most likely emerged from a pandemic uropathogenic O25:H4/sequence type 131 clone by acquiring an EAEC virulence plasmid from canonical EAEC. Surveillance of the horizontal transfer of both virulence and ESBL genes among E. coli strains is important for preventing a worldwide increase in antimicrobial drug resistance.

Indexed as

GenotypeMultilocus Sequence TypingPhylogenybeta-LactamasesBiofilmsChildChild, PreschoolDiarrheaEscherichia coliEscherichia coli InfectionsFecesHumansJapanPlasmidsVirulence Factorsbeta-lactamase CTX-M-14beta-LactamasesVirulence Factors

Identifiers

PMID27252465
PMCPMC4963495
OpenAlexW2491432939

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.