Evidence map›Paper›PMID 27252399›Full record

ArticleDatabase : the journal of biological databases and curation2016

Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.

Giltae Song, Rama Balakrishnan, Gail Binkley, Maria C Costanzo, Kyla Dalusag, Janos Demeter, Stacia Engel, Sage T Hellerstedt, Kalpana Karra, Benjamin C Hitz and 7 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Database : the journal of biological databases and curation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Curated protein information in the Saccharomyces genome database.Database : the journal of biological databases and curation · 2017
    Article
  7. From one to many: expanding the Saccharomyces cerevisiae reference genome panel.Database : the journal of biological databases and curation · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Giltae SongDepartment of Genetics, Stanford University, Stanford, CA, USA.
Rama BalakrishnanDepartment of Genetics, Stanford University, Stanford, CA, USA.
Gail BinkleyDepartment of Genetics, Stanford University, Stanford, CA, USA.
Maria C CostanzoDepartment of Genetics, Stanford University, Stanford, CA, USA.
Kyla DalusagDepartment of Genetics, Stanford University, Stanford, CA, USA.
Janos DemeterDepartment of Genetics, Stanford University, Stanford, CA, USA.
Stacia EngelDepartment of Genetics, Stanford University, Stanford, CA, USA.
Sage T HellerstedtDepartment of Genetics, Stanford University, Stanford, CA, USA.
Kalpana KarraDepartment of Genetics, Stanford University, Stanford, CA, USA.
Benjamin C HitzDepartment of Genetics, Stanford University, Stanford, CA, USA.
Robert S NashDepartment of Genetics, Stanford University, Stanford, CA, USA.
Kelley PaskovDepartment of Genetics, Stanford University, Stanford, CA, USA.
Travis SheppardDepartment of Genetics, Stanford University, Stanford, CA, USA.
Marek SkrzypekDepartment of Genetics, Stanford University, Stanford, CA, USA.
Shuai WengDepartment of Genetics, Stanford University, Stanford, CA, USA.
Edith WongDepartment of Genetics, Stanford University, Stanford, CA, USA.
J Michael CherryDepartment of Genetics, Stanford University, Stanford, CA, USA cherry@stanford.edu.

Funding

Genomic Resource for the Yeast SaccharomycesU41HG001315 · NHGRI · STANFORD UNIVERSITY · PI CHERRY, J. MICHAEL · 2011 to 2020
$26.4M
NHGRI NIH HHS U41 HG001315
6 · The paper itself

Abstract

The Saccharomyces Genome Database (SGD; http://www.yeastgenome.org/) is the authoritative community resource for the Saccharomyces cerevisiae reference genome sequence and its annotation. To provide a wider scope of genetic and phenotypic variation in yeast, the genome sequences and their corresponding annotations from 11 alternative S. cerevisiae reference strains have been integrated into SGD. Genomic and protein sequence information for genes from these strains are now available on the Sequence and Protein tab of the corresponding Locus Summary pages. We illustrate how these genome sequences can be utilized to aid our understanding of strain-specific functional and phenotypic differences.Database URL: www.yeastgenome.org.

Indexed as

Databases, GeneticGenome, FungalGenomicsMolecular Sequence AnnotationReproducibility of ResultsSaccharomycesSaccharomyces cerevisiaeUser-Computer Interface

Identifiers

PMID27252399
PMCPMC4888754

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.