Evidence map›Paper›PMID 27252292›Full record

ArticleThe Plant cell2016

Phytochrome Signaling Is Mediated by PHYTOCHROME INTERACTING FACTOR in the Liverwort Marchantia polymorpha.

Keisuke Inoue, Ryuichi Nishihama, Hideo Kataoka, Masashi Hosaka, Ryo Manabe, Mika Nomoto, Yasuomi Tada, Kimitsune Ishizaki, Takayuki Kohchi

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 93 citations in OpenAlex.

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  16. Functions of COP1/SPA E3 Ubiquitin Ligase Mediated by MpCRY in the LiverwortInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Keisuke InoueGraduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
Ryuichi NishihamaGraduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
Hideo KataokaGraduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
Masashi HosakaGraduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
Ryo ManabeGraduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan.
Mika NomotoDivision of Biological Science, Graduate School of Science, Nagoya University, Chikusa, Nagoya 464-8602, Japan.
Yasuomi TadaCenter for Gene Research, Nagoya University, Chikusa, Nagoya 464-8602, Japan.
Kimitsune IshizakiGraduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan Graduate School of Science, Kobe University, Kobe 657-8501, Japan.ORCID 0000-0003-0504-8196
Takayuki KohchiGraduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan tkohchi@lif.kyoto-u.ac.jp.
Kyoto University · JPNagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytochromes are red light (R) and far-red light (FR) receptors that play important roles in many aspects of plant growth and development. Phytochromes mainly function in the nucleus and regulate sets of genes by inhibiting negatively acting basic helix-loop-helix transcription factors named PHYTOCHROME INTERACTING FACTORs (PIFs) in Arabidopsis thaliana Although R/FR photoreversible responses and phytochrome genes are well documented in diverse lineages of plants, the extent to which phytochrome signaling is mediated by gene regulation beyond angiosperms remains largely unclear. Here, we show that the liverwort Marchantia polymorpha, an emerging model basal land plant, has only one phytochrome gene, Mp-PHY, and only one PIF gene, Mp-PIF These genes mediate typical low fluence responses, which are reversibly elicited by R and FR, and regulate gene expression. Mp-phy is light-stable and translocates into the nucleus upon irradiation with either R or FR, demonstrating that the single phytochrome Mp-phy exhibits combined biochemical and cell-biological characteristics of type I and type II phytochromes. Mp-phy photoreversibly regulates gemma germination and downstream gene expression by interacting with Mp-PIF and targeting it for degradation in an R-dependent manner. Our findings suggest that the molecular mechanisms for light-dependent transcriptional regulation mediated by PIF transcription factors were established early in land plant evolution.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantLightMarchantiaPhytochromePlant ProteinsSignal TransductionTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsPhytochromePlant ProteinsTranscription Factors

Identifiers

PMID27252292
PMCPMC4944405
OpenAlexW2416020549

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.