Evidence map›Paper›PMID 27252084›Full record

ArticleScientific reports2016

Tomato 26S Proteasome subunit RPT4a regulates ToLCNDV transcription and activates hypersensitive response in tomato.

Pranav Pankaj Sahu, Namisha Sharma, Swati Puranik, Supriya Chakraborty, Manoj Prasad

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
8.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
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  7. Geminivirus Resistance: A Minireview.Frontiers in plant science · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Pranav Pankaj SahuNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Namisha SharmaNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Swati PuranikNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
Supriya ChakrabortySchool of Life Sciences, Jawaharlal Nehru University, New Delhi-110067, India.
Manoj PrasadNational Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.
National Institute of Plant Genome Research · INJawaharlal Nehru University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Involvement of 26S proteasomal subunits in plant pathogen-interactions, and the roles of each subunit in independently modulating the activity of many intra- and inter-cellular regulators controlling physiological and defense responses of a plant were well reported. In this regard, we aimed to functionally characterize a Solanum lycopersicum 26S proteasomal subunit RPT4a (SlRPT4) gene, which was differentially expressed after Tomato leaf curl New Delhi virus (ToLCNDV) infection in tolerant cultivar H-88-78-1. Molecular analysis revealed that SlRPT4 protein has an active ATPase activity. SlRPT4 could specifically bind to the stem-loop structure of intergenic region (IR), present in both DNA-A and DNA-B molecule of the bipartite viral genome. Lack of secondary structure in replication-associated gene fragment prevented formation of DNA-protein complex suggesting that binding of SlRPT4 with DNA is secondary structure specific. Interestingly, binding of SlRPT4 to IR inhibited the function of RNA Pol-II and subsequently reduced the bi-directional transcription of ToLCNDV genome. Virus-induced gene silencing of SlRPT4 gene incited conversion of tolerant attributes of cultivar H-88-78-1 into susceptibility. Furthermore, transient overexpression of SlRPT4 resulted in activation of programmed cell death and antioxidant enzymes system. Overall, present study highlights non-proteolytic function of SlRPT4 and their participation in defense pathway against virus infection in tomato.

Indexed as

Genome, ViralBegomovirusDNA, ViralGene Expression RegulationHost-Pathogen InteractionsInverted Repeat SequencesPlant DiseasesPlant ImmunityPlant ProteinsProteasome Endopeptidase ComplexProtein BindingProtein SubunitsSignal TransductionSolanum lycopersicumTranscription, GeneticATP dependent 26S proteaseDNA, ViralPlant ProteinsProteasome Endopeptidase ComplexProtein Subunits

Identifiers

PMID27252084
PMCPMC4890432
OpenAlexW2419488549

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.