Evidence map›Paper›PMID 27250875›Full record

ArticleNature plants2016

Specific control of Arabidopsis BAK1/SERK4-regulated cell death by protein glycosylation.

Marcos V V de Oliveira, Guangyuan Xu, Bo Li, Luciano de Souza Vespoli, Xiangzong Meng, Xin Chen, Xiao Yu, Suzane Ariádina de Souza, Aline C Intorne, Ana Marcia E de A Manhães and 5 more

Abstract read
In one paragraph

Article in Nature plants, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
23.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it, 119 citations in OpenAlex.

  1. Pooled it
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  6. Article
  7. SERK5 genetically compensates for the loss of BAK1 and BKK1 in regulating elf18-triggered immune signaling inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Role of Methyl thiobutyrate toFrontiers in plant science · 2025
    Article
  9. Article
  10. Analysis of Protein Glycosylation in the ER.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  11. Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Marcos V V de OliveiraDepartment of Biochemistry &Biophysics, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Guangyuan XuDepartment of Biochemistry &Biophysics, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Bo LiDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Luciano de Souza VespoliDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Xiangzong MengDepartment of Biochemistry &Biophysics, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Xin ChenDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Xiao YuDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Suzane Ariádina de SouzaDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Aline C IntorneDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Ana Marcia E de A ManhãesDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Abbey L MusinskyDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Hisashi KoiwaMolecular and Environmental Plant Sciences, Texas A&M University, College Station, Texas 77843, USA.
Gonçalo A de Souza FilhoCenter of Biosciences &Biotechnology, Darcy Ribeiro State University of North Rio de Janeiro, 28013-602 Brazil.
Libo ShanDepartment of Plant Pathology &Microbiology, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Ping HeDepartment of Biochemistry &Biophysics, Institute for Plant Genomics &Biotechnology, Texas A&M University, College Station, Texas 77843, USA.
Texas A&M University · USState University of Norte Fluminense · BR

Funding

Differential regulation of plant innate immunityR01GM092893 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HE, PING · 2010 to 2022
$2.7M
Phosphorylation and ubiquitination of immune sensory complexes in innate immune signalingR01GM097247 · NIGMS · TEXAS A&M UNIVERSITY · PI SHAN, LIBO · 2011 to 2021
$2.4M
NIGMS NIH HHS R01 GM092893NIGMS NIH HHS R01 GM097247
6 · The paper itself

Abstract

Precise control of cell death is essential for the survival of all organisms. Arabidopsis thaliana BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (BAK1) and somatic embryogenesis receptor kinase 4 (SERK4) redundantly and negatively regulate cell death through elusive mechanisms. By deploying a genetic screen for suppressors of cell death triggered by virus-induced gene silencing of BAK1/SERK4 on Arabidopsis knockout collections, we identified STT3a, a protein involved in N-glycosylation modification, as an important regulator of bak1/serk4 cell death. Systematic investigation of glycosylation pathway and endoplasmic reticulum (ER) quality control (ERQC) components revealed distinct and overlapping mechanisms of cell death regulated by BAK1/SERK4 and their interacting protein BIR1. Genome-wide transcriptional analysis revealed the activation of members of cysteine-rich receptor-like kinase (CRK) genes in the bak1/serk4 mutant. Ectopic expression of CRK4 induced STT3a/N-glycosylation-dependent cell death in Arabidopsis and Nicotiana benthamiana. Therefore, N-glycosylation and specific ERQC components are essential to activate bak1/serk4 cell death, and CRK4 is likely to be among client proteins of protein glycosylation involved in BAK1/SERK4-regulated cell death.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCell DeathGene Expression ProfilingGlycosylationMutationPhenotypePlant LeavesPlant RootsProtein KinasesProtein Serine-Threonine KinasesSeedlingsArabidopsis ProteinsBAK1 protein, ArabidopsisCRK4 protein, ArabidopsisProtein KinasesProtein Serine-Threonine KinasesSERK4 protein, Arabidopsis

Identifiers

PMID27250875
PMCPMC5572757
OpenAlexW2417670369

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.