Evidence map›Paper›PMID 27250028›Full record

ArticleOncotarget2016

Transcriptomic and proteomic analysis of mouse radiation-induced acute myeloid leukaemia (AML).

Christophe Badie, Agnieszka Blachowicz, Zarko Barjaktarovic, Rosemary Finnon, Arlette Michaux, Hakan Sarioglu, Natalie Brown, Grainne Manning, M Abderrafi Benotmane, Soile Tapio and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Christophe BadieRadiation Effects Department, Centre for Radiation, Chemical and Environmental Hazards, Public Health England, Chilton, UK.
Agnieszka BlachowiczFaculty of Automatic Control, Electronics and Computer Science, Silesian University of Techology, Gliwice, Poland.
Zarko BarjaktarovicHelmholtz Zentrum München, German Research Center for Environmental Health GmbH, Radiation Proteomics Group, Institute of Radiation Biology, Neuherberg, Germany.
Rosemary FinnonRadiation Effects Department, Centre for Radiation, Chemical and Environmental Hazards, Public Health England, Chilton, UK.
Arlette MichauxRadiobiology Unit, Institute for Environment, Health and Safety, Belgian Nuclear Research Centre (SCK•.CEN), Mol, Belgium.
Hakan SariogluHelmholtz Zentrum München, German Research Center for Environmental Health GmbH, Research Unit Protein Science, Neuherberg, Germany.
Natalie BrownRadiation Effects Department, Centre for Radiation, Chemical and Environmental Hazards, Public Health England, Chilton, UK.
Grainne ManningRadiation Effects Department, Centre for Radiation, Chemical and Environmental Hazards, Public Health England, Chilton, UK.
M Abderrafi BenotmaneRadiobiology Unit, Institute for Environment, Health and Safety, Belgian Nuclear Research Centre (SCK•.CEN), Mol, Belgium.
Soile TapioHelmholtz Zentrum München, German Research Center for Environmental Health GmbH, Radiation Proteomics Group, Institute of Radiation Biology, Neuherberg, Germany.
Joanna PolanskaFaculty of Automatic Control, Electronics and Computer Science, Silesian University of Techology, Gliwice, Poland.
Simon D BoufflerRadiation Effects Department, Centre for Radiation, Chemical and Environmental Hazards, Public Health England, Chilton, UK.
Public Health England · GBHelmholtz Zentrum München · DEBelgian Nuclear Research Centre · BESilesian University of Technology · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A combined transcriptome and proteome analysis of mouse radiation-induced AMLs using two primary AMLs, cell lines from these primaries, another cell line and its in vivo passage is reported. Compared to haematopoietic progenitor and stem cells (HPSC), over 5000 transcriptome alterations were identified, 2600 present in all materials. 55 and 3 alterations were detected in the proteomes of the cell lines and primary/in vivo passage material respectively, with one common to all materials. In cell lines, approximately 50% of the transcriptome changes are related to adaptation to cell culture, and in the proteome this proportion was higher. An AML 'signature' of 17 genes/proteins commonly deregulated in primary AMLs and cell lines compared to HPSCs was identified and validated using human AML transcriptome data. This also distinguishes primary AMLs from cell lines and includes proteins such as Coronin 1, pontin/RUVBL1 and Myeloperoxidase commonly implicated in human AML. C-Myc was identified as having a key role in radiation leukaemogenesis. These data identify novel candidates relevant to mouse radiation AML pathogenesis, and confirm that pathways of leukaemogenesis in the mouse and human share substantial commonality.

Indexed as

ProteomeTranscriptomeAlgorithmsAnimalsATPases Associated with Diverse Cellular ActivitiesCarrier ProteinsCell Line, TumorDNA HelicasesGene Expression Regulation, LeukemicHematopoietic Stem CellsHumansLeukemia, Myeloid, AcuteMiceMicrofilament ProteinsNeoplasms, Radiation-InducedPeroxidaseATPases Associated with Diverse Cellular ActivitiesCarrier Proteinscoronin proteinsDNA HelicasesMicrofilament ProteinsPeroxidaseProteomeRUVBL1 protein, humanTIP48 protein, mouseacute myeloid leukaemiagene expressionionising radiationmouseprotein expression

Identifiers

PMID27250028
PMCPMC5130020
OpenAlexW2395359736

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.