Evidence map›Paper›PMID 27249581›Full record

ArticleJournal of the American Chemical Society2016

The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.

Che-Hsiung Hsu, Sangho Park, David E Mortenson, B Lachele Foley, Xiaocong Wang, Robert J Woods, David A Case, Evan T Powers, Chi-Huey Wong, H Jane Dyson and 1 more

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Soluble Human Lectins at the Host-Microbe Interface.Annual review of biochemistry · 2024
    Review
  5. A Computational and Chemical Design Strategy for Manipulating Glycan-Protein Recognition.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  6. Extending the Martini 3 Coarse-Grained Force Field to Carbohydrates.Journal of chemical theory and computation · 2022
    Article
  7. Review
  8. CH-π Interactions in Glycan Recognition.ACS chemical biology · 2021
    Review
  9. Article
  10. Article
  11. Synthetic Carbohydrate Chemistry and Translational Medicine.The Journal of organic chemistry · 2020
    Article
  12. Three-Dimensional Structures of Carbohydrates and Where to Find Them.International journal of molecular sciences · 2020
    Review
  13. Article
  14. Review
  15. Oligosaccharide Synthesis and Translational Innovation.Journal of the American Chemical Society · 2019
    Review
  16. Review
  17. Structure-based discovery of glycomimetic FmlH ligands as inhibitors of bacterial adhesion during urinary tract infection.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Che-Hsiung HsuDepartment of Molecular and Experimental Medicine, The Scripps Research Institute , La Jolla, California 92037, United States.
Sangho ParkDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, California 92037, United States.
David E MortensonDepartment of Molecular and Experimental Medicine, The Scripps Research Institute , La Jolla, California 92037, United States.
B Lachele FoleyComplex Carbohydrate Research Center, University of Georgia , 315 Riverbend Road, Athens, Georgia 30602, United States.
Xiaocong WangComplex Carbohydrate Research Center, University of Georgia , 315 Riverbend Road, Athens, Georgia 30602, United States.
Robert J WoodsComplex Carbohydrate Research Center, University of Georgia , 315 Riverbend Road, Athens, Georgia 30602, United States.
David A CaseDepartment of Chemistry and Chemical Biology, Rutgers University , Piscataway, New Jersey 08854, United States.
Evan T PowersDepartment of Chemistry, The Scripps Research Institute , La Jolla, California 92037, United States.
Chi-Huey WongDepartment of Chemistry, The Scripps Research Institute , La Jolla, California 92037, United States.
H Jane DysonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, California 92037, United States.
Jeffery W KellyDepartment of Molecular and Experimental Medicine, The Scripps Research Institute , La Jolla, California 92037, United States.
Scripps Research Institute · USUniversity of Georgia · USGenomics Research Center, Academia Sinica · TWRutgers, The State University of New Jersey · US

Funding

STRUCTURE AND STABILITY OF IKB/NF-KB COMPLEXESP01GM071862 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 2006 to 2016
$14.9M
TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
UNDERSTANDING B-SHEET STRUCTURE IN AQUEOUS SOLUTIONR01GM051105 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI KELLY, JEFFERY W · 1994 to 2019
$5.8M
Solution and solid structures from NMRR01GM045811 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI CASE, DAVID A · 1991 to 2016
$3.7M
Carbohydrate-based Antiinfective AgentsR01AI072155 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WONG, CHI-HUEY · 2007 to 2014
$3.7M
Continued Development and Maintenance of GLYCAM-WebR01GM100058 · NIGMS · UNIVERSITY OF GEORGIA · PI FOLEY, B. LACHELE, WOODS, ROBERT J · 2012 to 2015
$1.1M
NIAID NIH HHS R01 AI072155NIGMS NIH HHS P01 GM071862NIGMS NIH HHS P41 GM103390NIGMS NIH HHS R01 GM045811NIGMS NIH HHS R01 GM051105NIGMS NIH HHS R01 GM100058
6 · The paper itself

Abstract

Interactions between proteins and carbohydrates are ubiquitous in biology. Therefore, understanding the factors that determine their affinity and selectivity are correspondingly important. Herein, we have determined the relative strengths of intramolecular interactions between a series of monosaccharides and an aromatic ring close to the glycosylation site in an N-glycoprotein host. We employed the enhanced aromatic sequon, a structural motif found in the reverse turns of some N-glycoproteins, to facilitate face-to-face monosaccharide-aromatic interactions. A protein host was used because the dependence of the folding energetics on the identity of the monosaccharide can be accurately measured to assess the strength of the carbohydrate-aromatic interaction. Our data demonstrate that the carbohydrate-aromatic interaction strengths are moderately affected by changes in the stereochemistry and identity of the substituents on the pyranose rings of the sugars. Galactose seems to make the weakest and allose the strongest sugar-aromatic interactions, with glucose, N-acetylglucosamine (GlcNAc) and mannose in between. The NMR solution structures of several of the monosaccharide-containing N-glycoproteins were solved to further understand the origins of the similarities and differences between the monosaccharide-aromatic interaction energies. Peracetylation of the monosaccharides substantially increases the strength of the sugar-aromatic interaction in the context of our N-glycoprotein host. Finally, we discuss our results in light of recent literature regarding the contribution of electrostatics to CH-π interactions and speculate on what our observations imply about the absolute conservation of GlcNAc as the monosaccharide through which N-linked glycans are attached to glycoproteins in eukaryotes.

Indexed as

GlycoproteinsGlycosylationHydrocarbons, AromaticMagnetic Resonance SpectroscopyModels, MolecularMonosaccharidesStereoisomerismThermodynamicsGlycoproteinsHydrocarbons, AromaticMonosaccharides

Identifiers

PMID27249581
PMCPMC4924591
OpenAlexW2414384984

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.