Evidence map›Paper›PMID 27248180›Full record

ArticleOncotarget2016

The genetic landscape of dural marginal zone lymphomas.

Karthik A Ganapathi, Vaidehi Jobanputra, Fabio Iwamoto, Preti Jain, Jinli Chen, Luciano Cascione, Odelia Nahum, Brynn Levy, Yi Xie, Pallavi Khattar and 8 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Genomic landscape of Epstein-Barr virus-positive extranodal marginal zone lymphomas of mucosa-associated lymphoid tissue.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2022
    Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Identification of recurrent mutational events in anorectal melanoma.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Karthik A GanapathiDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Vaidehi JobanputraDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Fabio IwamotoDepartment of Neurology, Columbia University Medical Center, New York, NY, USA.
Preti JainDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Jinli ChenDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Luciano CascioneInstitute of Oncology Research and Oncology Institute of Southern Switzerland, Bellinzona, Switzerland.
Odelia NahumDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Brynn LevyDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Yi XieHematopathology Section, Laboratory of Pathology, National Cancer Institute, Bethesda, MD, USA.
Pallavi KhattarDepartment of Pathology, New York Medical College, Valhalla, NY, USA.
Daniela HoehnDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Francesco BertoniInstitute of Oncology Research and Oncology Institute of Southern Switzerland, Bellinzona, Switzerland.
Vundavalli V MurtyDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Stefania PittalugaHematopathology Section, Laboratory of Pathology, National Cancer Institute, Bethesda, MD, USA.
Elaine S JaffeHematopathology Section, Laboratory of Pathology, National Cancer Institute, Bethesda, MD, USA.
Bachir AlobeidDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Mahesh M MansukhaniDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Govind BhagatDepartment of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA.
Columbia University Irving Medical Center · USNational Cancer Institute · USInstitute of Oncology Research · CHNew York Medical College · US

Funding

Lymphoma Disease Discovery and DefintionZIASC000550 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI JAFFE, ELAINE · 2009 to 2025
$16.9M
Hematopathology DiagnosisZIABC011070 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI JAFFE, ELAINE · 2009 to 2025
$14.5M
Hematopathology FellowshipZIEBC011241 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI JAFFE, ELAINE · 2009 to 2025
$11.1M
6 · The paper itself

Abstract

The dura is a rare site of involvement by marginal zone lymphoma (MZL) and the biology of dural MZL is not well understood. We performed genome-wide DNA copy number and targeted mutational analysis of 14 dural MZL to determine the genetic landscape of this entity. Monoallelic and biallelic inactivation of TNFAIP3 by mutation (n=5) or loss (n=1) was observed in 6/9 (67%) dural MZL exhibiting plasmacytic differentiation, including 3 IgG4+ cases. In contrast, activating NOTCH2 mutations were detected in 4/5 (80%) dural MZL displaying variable monocytoid morphology. Inactivating TBL1XR1 mutations were identified in all NOTCH2 mutated cases. Recurrent mutations in KLHL6 (n=2) and MLL2 (n=2) were also detected. Gains at 6p25.3 (n=2) and losses at 1p36.32 (n=3) were common chromosomal imbalances, with loss of heterozygosity (LOH) of these loci observed in a subset of cases. Translocations involving the IGH or MALT1 genes were not identified. Our results indicate genetic similarities between dural MZL and other MZL subtypes. However, recurrent and mutually exclusive genetic alterations of TNFAIP3 and NOTCH2 appear to be associated with distinct disease phenotypes in dural MZL.

Indexed as

Genetic VariationAdultChromosome AberrationsDNA Mutational AnalysisDura MaterFemaleGenetic Predisposition to DiseaseHumansIn Situ Hybridization, FluorescenceLymphoma, B-Cell, Marginal ZoneMaleMeningeal NeoplasmsMiddle AgedMutationdural marginal zone lymphomagenomemutationsNOTCH2TNFAIP3

Identifiers

PMID27248180
PMCPMC5190007
OpenAlexW2402390033

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.