Evidence map›Paper›PMID 27247266›Full record

ArticleMolecular and cellular biology2016

The C-Terminal RGG Domain of Human Lsm4 Promotes Processing Body Formation Stimulated by Arginine Dimethylation.

Marcos Arribas-Layton, Jaclyn Dennis, Eric J Bennett, Christian K Damgaard, Jens Lykke-Andersen

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
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  5. Landscape of intrinsically disordered proteins in mental disorder diseases.Computational and structural biotechnology journal · 2024
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  10. Yeast Lsm Pro-Apoptotic Mutants Show Defects in Autophagy.International journal of molecular sciences · 2023
    Article
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  12. Article
  13. Emerging Implications of Phase Separation in Cancer.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Marcos Arribas-LaytonDivision of Biological Sciences, University of California, San Diego, La Jolla, California, USA.
Jaclyn DennisMolecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, USA.
Eric J BennettDivision of Biological Sciences, University of California, San Diego, La Jolla, California, USA.
Christian K DamgaardMolecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, USA Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark ckd@mbg.au.dk jlykkeandersen@ucsd.edu.
Jens Lykke-AndersenDivision of Biological Sciences, University of California, San Diego, La Jolla, California, USA Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, Colorado, USA ckd@mbg.au.dk jlykkeandersen@ucsd.edu.
University of California, San Diego · USUniversity of Colorado Boulder · USAarhus University · DK

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
Mechanisms of human RNA turnover and quality controlR35GM118069 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LYKKE-ANDERSEN, JENS · 2016 to 2025
$5.1M
Manipulating Protein Homeostasis through Specialized Quality Control RibosomesDP2GM119132 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BENNETT, ERIC J · 2015 to 2015
$2.3M
The Function of Processing Bodies in Human mRNA TurnoverR01GM077243 · NIGMS · UNIVERSITY OF COLORADO · PI LYKKE-ANDERSEN, JENS · 2007 to 2015
$1.7M
The role of decapping factors in mRNP remodelingF31GM106655 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ARRIBAS-LAYTON, MARC · 2013 to 2014
$70k
A possible role for the methylosome complex in processing bodiesF31GM083624 · NIGMS · UNIVERSITY OF COLORADO · PI DENNIS, JACLYN ROSE · 2008 to 2009
$54k
NIGMS NIH HHS DP2 GM119132NIGMS NIH HHS F31 GM083624NIGMS NIH HHS F31 GM106655NIGMS NIH HHS R01 GM077243NIGMS NIH HHS R35 GM118069NIGMS NIH HHS T32 GM007240
6 · The paper itself

Abstract

Processing bodies (PBs) are conserved cytoplasmic aggregations of translationally repressed mRNAs assembled with mRNA decay factors. The aggregation of mRNA-protein (mRNP) complexes into PBs involves interactions between low-complexity regions of protein components of the mRNPs. In Saccharomyces cerevisiae, the carboxy (C)-terminal Q/N-rich domain of the Lsm4 subunit of the Lsm1-7 complex plays an important role in PB formation, but the C-terminal domain of Lsm4 in most eukaryotes is an RGG domain rather than Q/N rich. Here we show that the Lsm4 RGG domain promotes PB accumulation in human cells and that symmetric dimethylation of arginines within the RGG domain stimulates this process. A mutant Lsm4 protein lacking the RGG domain failed to rescue PB formation in cells depleted of endogenous Lsm4, although this mutant protein retained the ability to assemble with Lsm1-7, associate with decapping factors, and promote mRNA decay and translational repression. Mutation of the symmetrically dimethylated arginines within the RGG domain impaired the ability of Lsm4 to promote PB accumulation. Depletion of PRMT5, the primary protein arginine methyltransferase responsible for symmetric arginine dimethylation, including Lsm4, resulted in loss of PBs. We also uncovered the histone acetyltransferase 1 (HAT1)-RBBP7 lysine acetylase complex as an interaction partner of the Lsm4 RGG domain but found no evidence of a role for this complex in PB metabolism. Together, our findings suggest a stimulatory role for posttranslational modifications in PB accumulation and raise the possibility that mRNP dynamics are posttranslationally regulated.

Indexed as

ArginineCytoplasmic GranulesGene Expression RegulationHistone AcetyltransferasesHumansMethylationMutationProtein-Arginine N-MethyltransferasesProtein DomainsProtein Processing, Post-TranslationalRibonucleoproteinsRibonucleoproteins, Small NuclearRNA CapsRNA, MessengerRNA StabilityArginineHistone Acetyltransferaseshistone acetyltransferase type B complexLSM4 protein, humanmessenger ribonucleoproteinPRMT5 protein, humanProtein-Arginine N-MethyltransferasesRibonucleoproteinsRibonucleoproteins, Small NuclearRNA CapsRNA, Messenger

Identifiers

PMID27247266
PMCPMC4985932
OpenAlexW2409537068

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.