Evidence map›Paper›PMID 27246988›Full record

ArticleScientific reports2016

Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes.

Xin Chen, Jun Guo, Tao Cai, Fengshan Zhang, Shengfa Pan, Li Zhang, Shaobo Wang, Feifei Zhou, Yinze Diao, Yanbin Zhao and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Association analysis and functional study of COL6A1 single nucleotide polymorphisms in thoracic ossification of the ligamentum flavum in the Chinese Han population.European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society · 2021
    Article
  6. Article
  7. Article
  8. The Genetic Architecture of High Bone Mass.Frontiers in endocrinology · 2020
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Xin ChenOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Jun GuoBeijing Anzhen Hospital, Capital Medical University, The Key Laboratory of Remodeling-Related Cardiovascular Diseases, Ministry of Education, Beijing Collaborative Innovation Center for Cardiovascular Disorders, Beijing Institute of Heart, Lung &Blood Vessel Disease, Beijing, China.
Tao CaiBeijing Anzhen Hospital, Capital Medical University, The Key Laboratory of Remodeling-Related Cardiovascular Diseases, Ministry of Education, Beijing Collaborative Innovation Center for Cardiovascular Disorders, Beijing Institute of Heart, Lung &Blood Vessel Disease, Beijing, China.
Fengshan ZhangOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Shengfa PanOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Li ZhangOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Shaobo WangOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Feifei ZhouOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Yinze DiaoOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Yanbin ZhaoOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Zhen ChenOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Xiaoguang LiuOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Zhongqiang ChenOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Zhongjun LiuOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Yu SunOrthopaedic Department, Institute of Spinal Surgery, Peking University Third Hospital, Beijing, China.
Jie DuBeijing Anzhen Hospital, Capital Medical University, The Key Laboratory of Remodeling-Related Cardiovascular Diseases, Ministry of Education, Beijing Collaborative Innovation Center for Cardiovascular Disorders, Beijing Institute of Heart, Lung &Blood Vessel Disease, Beijing, China.
Peking University Third Hospital · CNPeking University · CNBeijing Anzhen Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ossification of the posterior longitudinal ligament of the spine (OPLL), which is characterized by ectopic bone formation in the spinal ligaments, can cause spinal-cord compression. To date, at least 11 susceptibility genes have been genetically linked to OPLL. In order to identify potential deleterious alleles in these OPLL-associated genes, we designed a capture array encompassing all coding regions of the target genes for next-generation sequencing (NGS) in a cohort of 55 unrelated patients with OPLL. By bioinformatics analyses, we successfully identified three novel and five extremely rare variants (MAF < 0.005). These variants were predicted to be deleterious by commonly used various algorithms, thereby resulting in missense mutations in four OPLL-associated genes (i.e., COL6A1, COL11A2, FGFR1, and BMP2). Furthermore, potential effects of the patient with p.Q89E of BMP2 were confirmed by a markedly increased BMP2 level in peripheral blood samples. Notably, seven of the variants were found to be associated with the patients with continuous subtype changes by cervical spinal radiological analyses. Taken together, our findings revealed for the first time that deleterious coding variants of the four OPLL-associated genes are potentially pathogenic in the patients with OPLL.

Indexed as

Genetic Predisposition to DiseaseMutation, MissenseAdultAgedBone Morphogenetic Protein 2Cohort StudiesCollagen Type VICollagen Type XIComputational BiologyFemaleGene ExpressionGenetic Association StudiesHigh-Throughput Nucleotide SequencingHumansLongitudinal LigamentsMagnetic Resonance ImagingBMP2 protein, humanBone Morphogenetic Protein 2COL11A2 protein, humanCol6a1 protein, humanCollagen Type VICollagen Type XIFGFR1 protein, humanReceptor, Fibroblast Growth Factor, Type 1

Identifiers

PMID27246988
PMCPMC4887887
OpenAlexW2468763862

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.