Evidence map›Paper›PMID 27245141›Full record

ArticleJournal of biomolecular screening2016

Transcriptional Inhibitors Identified in a 160,000-Compound Small-Molecule DUX4 Viability Screen.

Si Ho Choi, Darko Bosnakovski, Jessica M Strasser, Erik A Toso, Michael A Walters, Michael Kyba

Open access · hybridAbstract read
In one paragraph

Article in Journal of biomolecular screening, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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  4. Review
  5. Review
  6. Targeted epigenetic repression by CRISPR/dSaCas9 suppresses pathogenicMolecular therapy. Methods & clinical development · 2021
    Article
  7. DNA aptamers against the DUX4 protein reveal novel therapeutic implications for FSHD.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Si Ho ChoiLillehei Heart Institute, University of Minnesota, Minneapolis, MN, USA Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA Research Center, Dongnam Institute of Radiological & Medical Sciences (DIRAMS), Busan, South Korea.
Darko BosnakovskiLillehei Heart Institute, University of Minnesota, Minneapolis, MN, USA Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA University Goce Delcˇ ev-Štip, Faculty of Medical Sciences, Krste Misirkov b.b., 2000 Štip, Republic of Macedonia.
Jessica M StrasserInstitute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, MN, USA.
Erik A TosoLillehei Heart Institute, University of Minnesota, Minneapolis, MN, USA Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA.
Michael A WaltersInstitute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, MN, USA.
Michael KybaLillehei Heart Institute, University of Minnesota, Minneapolis, MN, USA Department of Pediatrics, University of Minnesota, Minneapolis, MN, USA kyba@umn.edu.
University of Minnesota · USMinneapolis Heart Institute Foundation · USGoce Delcev University · MK

Funding

Probing the Activity of DUX4 in FSHDR01AR055685 · NIAMS · UNIVERSITY OF MINNESOTA · PI Michael Kyba · 2010 to 2026
$7.0M
Development of anti-DUX4 therapeutics for FSHDR21NS076671 · NINDS · UNIVERSITY OF MINNESOTA · PI KYBA, MICHAEL · 2011 to 2012
$415k
NIAMS NIH HHS R01 AR055685NINDS NIH HHS R21 NS076671
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy is a genetically dominant, currently untreatable muscular dystrophy. It is caused by mutations that enable expression of the normally silent DUX4 gene, which encodes a pathogenic transcription factor. A screen based on Tet-on DUX4-induced mouse myoblast death previously uncovered compounds from a 44,000-compound library that protect against DUX4 toxicity. Many of those compounds acted downstream of DUX4 in an oxidative stress pathway. Here, we extend this screen to an additional 160,000 compounds and, using greater stringency, identify a new set of DUX4-protective compounds. From 640 hits, we performed secondary screens, repurchased 46 of the most desirable, confirmed activity, and tested each for activity against other cell death-inducing insults. The majority of these compounds also protected against oxidative stress. Of the 100 repurchased compounds identified through both screens, only SHC40, 75, and 98 inhibited DUX4 target genes, but they also inhibited dox-mediated DUX4 expression. Using a target gene readout on the 640-compound hit set, we discovered three overlooked compounds, SHC351, 540, and 572, that inhibit DUX4 target gene upregulation without nonspecific effects on the Tet-on system. These novel inhibitors of DUX4 transcriptional activity may thus act on pathways or cofactors needed by DUX4 for transcriptional activation in these cells.

Indexed as

AnimalsGene Expression RegulationHigh-Throughput Screening AssaysHomeodomain ProteinsHumansMiceMuscular Dystrophy, FacioscapulohumeralMutationOxidative StressSmall Molecule LibrariesTranscriptional ActivationTranscription, GeneticDUX4L1 protein, humanHomeodomain ProteinsSmall Molecule LibrariesDUX4facioscapulohumeral muscular dystrophyhigh-throughput screeningsmall-molecule inhibitors

Identifiers

PMID27245141
PMCPMC5501317
OpenAlexW2414202394

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.