Evidence map›Paper›PMID 27243788›Full record

ArticleScientific reports2016

Transcriptome Signatures Reveal Rapid Induction of Immune-Responsive Genes in Human Memory CD8(+) T Cells.

Cheng Yang, Asma Khanniche, Joanna R DiSpirito, Ping Ji, Shujun Wang, Ying Wang, Hao Shen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. CD29 identifies IFN-γ-producing human CD8Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. Article
  10. Divide, Conquer, and Sense: CD8Frontiers in immunology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Cheng YangShanghai Institute of Immunology, Shanghai Jiaotong University School of Medicine, Shanghai, China.
Asma KhannicheShanghai Institute of Immunology, Shanghai Jiaotong University School of Medicine, Shanghai, China.
Joanna R DiSpiritoDepartment of Microbiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Ping JiShanghai Institute of Immunology, Shanghai Jiaotong University School of Medicine, Shanghai, China.
Shujun WangShanghai Institute of Immunology, Shanghai Jiaotong University School of Medicine, Shanghai, China.
Ying WangShanghai Institute of Immunology, Shanghai Jiaotong University School of Medicine, Shanghai, China.
Hao ShenShanghai Institute of Immunology, Shanghai Jiaotong University School of Medicine, Shanghai, China.
Shanghai Jiao Tong University · CNUniversity of Pennsylvania · US

Funding

The Impact of Bacterial Co-Infectin on Respiratory Virus-Specific T cell ResponseU19AI083022 · NIAID · WISTAR INSTITUTE · PI WHERRY, E. JOHN · 2009 to 2013
$10.7M
Development of a novel adjuvant for vaccine sparingR01AI105431 · NIAID · NEW YORK BLOOD CENTER · PI BOTTAZZI, MARIA ELENA, LUSTIGMAN, SARA · 2013 to 2017
$6.3M
Mechanisms of Haemophilus influenzae pathogenesis in the lungR01AI095740 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI AKERLEY, BRIAN, SHEN, HAO · 2012 to 2016
$1.8M
Molecular basis of defective CD8 T cells during chronic viral infectionR21AI079724 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SHEN, HAO · 2009 to 2010
$433k
NIAID NIH HHS R01 AI095740NIAID NIH HHS R01 AI105431NIAID NIH HHS R21 AI079724NIAID NIH HHS U19 AI083022
6 · The paper itself

Abstract

Memory T cells (TM) play a prominent role in protection and auto-immunity due to their ability to mount a more effective response than naïve T cells (TN). However, the molecular mechanisms underlying enhanced functionality of TM are not well defined, particularly in human TM. We examined the global gene expression profiles of human CD8(+) TN and TM before and after stimulation. There were 1,284, 1,373 and 1,629 differentially expressed genes between TN and TM at 0 hr, 4 hr and 24 hr after stimulation, respectively, with more genes expressed to higher levels in TM. Genes rapidly up-regulated in TN cells were largely involved in nitrogen, nucleoside and amino acid metabolisms. In contrast, those in CD8(+) TM were significantly enriched for immune-response-associated processes, including cytokine production, lymphocyte activation and chemotaxis. Multiple cytokines were rapidly up-regulated in TM cells, including effector cytokines known to be produced by CD8(+) T cells and important for their functions, as well as regulatory cytokines, both pro- and anti-inflammatory, that are not typically produced by CD8(+) T cells. These results provide new insights into molecular mechanisms that contribute to the enhanced functionality of human CD8(+) TM and their prominent role in protection and auto-immunity.

Indexed as

TranscriptomeAmino AcidsCD8-Positive T-LymphocytesCell DifferentiationChemotaxisCytokinesGene Expression ProfilingGene Expression RegulationGenome, HumanHumansImmunologic MemoryLymphocyte ActivationMicroarray AnalysisMolecular Sequence AnnotationNitrogenNucleosidesAmino AcidsCytokinesNitrogenNucleosides

Identifiers

PMID27243788
PMCPMC4886650
OpenAlexW2411749498

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.