Evidence map›Paper›PMID 27242871›Full record

ArticleFrontiers in plant science2016

The Alcohol Dehydrogenase Gene Family in Melon (Cucumis melo L.): Bioinformatic Analysis and Expression Patterns.

Yazhong Jin, Chong Zhang, Wei Liu, Yufan Tang, Hongyan Qi, Hao Chen, Songxiao Cao

Abstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
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  5. De Novo Transcriptome Assembly of Cedar (Current issues in molecular biology · 2024
    Article
  6. Article
  7. Article
  8. Plants (Basel, Switzerland) · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Postharvest chilling diminishes melon flavorFrontiers in plant science · 2022
    Article
  16. Article
  17. Article
  18. CRISPR/Cas9 Directed Mutagenesis ofInternational journal of molecular sciences · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yazhong JinKey Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Department of Horticulture, Shenyang Agricultural UniversityShenyang, China; College of Agriculture, Heilongjiang Bayi Agricultural UniversityDaqing, China.
Chong ZhangKey Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Department of Horticulture, Shenyang Agricultural University Shenyang, China.
Wei LiuKey Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Department of Horticulture, Shenyang Agricultural University Shenyang, China.
Yufan TangKey Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Department of Horticulture, Shenyang Agricultural University Shenyang, China.
Hongyan QiKey Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Department of Horticulture, Shenyang Agricultural University Shenyang, China.
Hao ChenKey Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Department of Horticulture, Shenyang Agricultural University Shenyang, China.
Songxiao CaoKey Laboratory of Protected Horticulture of Education Ministry and Liaoning Province, Department of Horticulture, Shenyang Agricultural University Shenyang, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alcohol dehydrogenases (ADH), encoded by multigene family in plants, play a critical role in plant growth, development, adaptation, fruit ripening and aroma production. Thirteen ADH genes were identified in melon genome, including 12 ADHs and one formaldehyde dehydrogenease (FDH), designated CmADH1-12 and CmFDH1, in which CmADH1 and CmADH2 have been isolated in Cantaloupe. ADH genes shared a lower identity with each other at the protein level and had different intron-exon structure at nucleotide level. No typical signal peptides were found in all CmADHs, and CmADH proteins might locate in the cytoplasm. The phylogenetic tree revealed that 13 ADH genes were divided into three groups respectively, namely long-, medium-, and short-chain ADH subfamily, and CmADH1,3-11, which belongs to the medium-chain ADH subfamily, fell into six medium-chain ADH subgroups. CmADH12 may belong to the long-chain ADH subfamily, while CmFDH1 may be a Class III ADH and serve as an ancestral ADH in melon. Expression profiling revealed that CmADH1, CmADH2, CmADH10 and CmFDH1 were moderately or strongly expressed in different vegetative tissues and fruit at medium and late developmental stages, while CmADH8 and CmADH12 were highly expressed in fruit after 20 days. CmADH3 showed preferential expression in young tissues. CmADH4 only had slight expression in root. Promoter analysis revealed several motifs of CmADH genes involved in the gene expression modulated by various hormones, and the response pattern of CmADH genes to ABA, IAA and ethylene were different. These CmADHs were divided into ethylene-sensitive and -insensitive groups, and the functions of CmADHs were discussed.

Indexed as

alcohol dehydrogenasesbioinformatic analysisexpression pattern of genegene identificationmelon

Identifiers

PMID27242871
PMCPMC4870255

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.