Evidence map›Paper›PMID 27242754›Full record

ArticleFrontiers in microbiology2016

Backup Expression of the PhaP2 Phasin Compensates for phaP1 Deletion in Herbaspirillum seropedicae, Maintaining Fitness and PHB Accumulation.

Luis P S Alves, Cícero S Teixeira, Evandro F Tirapelle, Lucélia Donatti, Michelle Z Tadra-Sfeir, Maria B R Steffens, Emanuel M de Souza, Fabio de Oliveira Pedrosa, Leda S Chubatsu, Marcelo Müller-Santos

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. PHB Biosynthesis Counteracts Redox Stress inFrontiers in microbiology · 2018
    Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Luis P S AlvesNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Cícero S TeixeiraNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Evandro F TirapelleNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Lucélia DonattiFunctional Morphology and Comparative Ecophysiology Laboratory, Cell Biology Department, Federal University of Paraná Curitiba, Brazil.
Michelle Z Tadra-SfeirNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Maria B R SteffensNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Emanuel M de SouzaNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Fabio de Oliveira PedrosaNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Leda S ChubatsuNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Marcelo Müller-SantosNitrogen Fixation Laboratory, Department of Biochemistry and Molecular Biology, Federal University of Paraná Curitiba, Brazil.
Universidade Federal do Paraná · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phasins are important proteins controlling poly-3-hydroxybutyrate (PHB) granules formation, their number into the cell and stability. The genome sequencing of the endophytic and diazotrophic bacterium Herbaspirillum seropedicae SmR1 revealed two homologous phasin genes. To verify the role of the phasins on PHB accumulation in the parental strain H. seropedicae SmR1, isogenic strains defective in the expression of phaP1, phaP2 or both genes were obtained by gene deletion and characterized in this work. Despite of the high sequence similarity between PhaP1 and PhaP2, PhaP1 is the major phasin in H. seropedicae, since its deletion reduced PHB accumulation by ≈50% in comparison to the parental and ΔphaP2. Upon deletion of phaP1, the expression of phaP2 was sixfold enhanced in the ΔphaP1 strain. The responsive backup expression of phaP2 partially rescued the ΔphaP1 mutant, maintaining about 50% of the parental PHB level. The double mutant ΔphaP1.2 did not accumulate PHB in any growth stage and showed a severe reduction of growth when glucose was the carbon source, a clear demonstration of negative impact in the fitness. The co-occurrence of phaP1 and phaP2 homologous in bacteria relatives of H. seropedicae, including other endophytes, indicates that the mechanism of phasin compensation by phaP2 expression may be operating in other organisms, showing that PHB metabolism is a key factor to adaptation and efficiency of endophytic bacteria.

Indexed as

backup regulationgranule-associated proteinsHerbaspirillum seropedicaephasinPHBpolyhydroxybutyrate

Identifiers

PMID27242754
PMCPMC4873508
OpenAlexW2394862263

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.