Evidence map›Paper›PMID 27241949›Full record

ArticleScientific reports2016

Lanthanum induced B-to-Z transition in self-assembled Y-shaped branched DNA structure.

Ashok K Nayak, Aseem Mishra, Bhabani S Jena, Barada K Mishra, Umakanta Subudhi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ashok K NayakDNA Nanotechnology &Application Laboratory, CSIR-Institute of Minerals &Materials Technology, Bhubaneswar 751 013, India.
Aseem MishraDNA Nanotechnology &Application Laboratory, CSIR-Institute of Minerals &Materials Technology, Bhubaneswar 751 013, India.
Bhabani S JenaDNA Nanotechnology &Application Laboratory, CSIR-Institute of Minerals &Materials Technology, Bhubaneswar 751 013, India.
Barada K MishraDNA Nanotechnology &Application Laboratory, CSIR-Institute of Minerals &Materials Technology, Bhubaneswar 751 013, India.
Umakanta SubudhiDNA Nanotechnology &Application Laboratory, CSIR-Institute of Minerals &Materials Technology, Bhubaneswar 751 013, India.
Institute of Minerals and Materials Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Controlled conversion of right-handed B-DNA to left-handed Z-DNA is one of the greatest conformational transitions in biology. Recently, the B-Z transition has been explored from nanotechnological points of view and used as the driving machinery of many nanomechanical devices. Using a combination of CD spectroscopy, fluorescence spectroscopy, and PAGE, we demonstrate that low concentration of lanthanum chloride can mediate B-to-Z transition in self-assembled Y-shaped branched DNA (bDNA) structure. The transition is sensitive to the sequence and structure of the bDNA. Thermal melting and competitive dye binding experiments suggest that La(3+) ions are loaded to the major and minor grooves of DNA and stabilize the Z-conformation. Our studies also show that EDTA and EtBr play an active role in reversing the transition from Z-to-B DNA.

Indexed as

DNA, B-FormDNA, Z-FormEdetic AcidEthidiumLanthanumDNA, B-FormDNA, Z-FormEdetic AcidEthidiumLanthanumlanthanum chloride

Identifiers

PMID27241949
PMCPMC4886512
OpenAlexW2409019831

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.