Evidence map›Paper›PMID 27240734›Full record

ArticleeLife2016

Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals.

Matthew D Daugherty, Aaron M Schaller, Adam P Geballe, Harmit S Malik

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 104 citations in OpenAlex.

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  12. Antiviral Mx proteins have an ancient origin and widespread distribution among eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2025
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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Matthew D DaughertyDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States.ORCID 0000-0002-4879-9603
Aaron M SchallerDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States.
Adam P GeballeDivisions of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, United States.
Harmit S MalikDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, United States.ORCID 0000-0001-6005-0016
Howard Hughes Medical Institute · USFred Hutch Cancer Center · USUniversity of Washington · US

Funding

TRANSLATIONAL CONTROL OF CYTOMEGALOVIRUS GENE EXPRESSIONR01AI026672 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GEBALLE, ADAM P. · 1994 to 2017
$6.9M
MOLECULAR BIOLOGY &PATHOGENESIS OF ADENOVIRUSR01AI023762 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPINDLER, KATHERINE R. · 1987 to 2007
$2.2M
FHCRC High-Performance Computing ClusterS10OD020069 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KOOPERBERG, CHARLES L · 2015 to 2015
$600k
Poxviral antagonism of the IFIT-mediated antiviral responseR21AI099936 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MALIK, HARMIT S. · 2012 to 2013
$468k
Consequences of IFIT Gene Evolution on Species-Specific Antiviral ImmunityK22AI119017 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAUGHERTY, MATTHEW · 2016 to 2017
$267k
Howard Hughes Medical InstituteNIAID NIH HHS K22 AI119017NIAID NIH HHS R01 AI023762NIAID NIH HHS R01 AI026672NIAID NIH HHS R21 AI099936NIH HHS S10 OD020069
6 · The paper itself

Abstract

IFIT (interferon-induced with tetratricopeptide repeats) proteins are critical mediators of mammalian innate antiviral immunity. Mouse IFIT1 selectively inhibits viruses that lack 2'O-methylation of their mRNA 5' caps. Surprisingly, human IFIT1 does not share this antiviral specificity. Here, we resolve this discrepancy by demonstrating that human and mouse IFIT1 have evolved distinct functions using a combination of evolutionary, genetic and virological analyses. First, we show that human IFIT1 and mouse IFIT1 (renamed IFIT1B) are not orthologs, but are paralogs that diverged >100 mya. Second, using a yeast genetic assay, we show that IFIT1 and IFIT1B proteins differ in their ability to be suppressed by a cap 2'O-methyltransferase. Finally, we demonstrate that IFIT1 and IFIT1B have divergent antiviral specificities, including the discovery that only IFIT1 proteins inhibit a virus encoding a cap 2'O-methyltransferase. These functional data, combined with widespread turnover of mammalian IFIT genes, reveal dramatic species-specific differences in IFIT-mediated antiviral repertoires.

Indexed as

Host-Pathogen InteractionsAdaptor Proteins, Signal TransducingAnimalsBiological AssayBiological EvolutionCarrier ProteinsGene Expression RegulationHumansImmunity, InnateMethyltransferasesMicePhylogenyProtein IsoformsRNA-Binding ProteinsRNA, MessengerSaccharomyces cerevisiaeAdaptor Proteins, Signal TransducingCarrier ProteinsIFIT1 protein, humanIfit1 protein, mouseMethyltransferasesProtein IsoformsRNA 2'-O-methyltransferaseRNA-Binding ProteinsRNA, MessengerViral Proteinsevolutionary biologygene conversiongenomicshost-virus interactionshumaninfectious diseaseinnate immunitymicrobiologymousemRNA modificationphylogenyS. cerevisiaetranslationvirus

Identifiers

PMID27240734
PMCPMC4887208
OpenAlexW2413147630

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.