Evidence map›Paper›PMID 27240345›Full record

ArticleInternational journal of molecular sciences2016

Cloning, Expression and 3D Structure Prediction of Chitinase from Chitinolyticbacter meiyuanensis SYBC-H1.

Zhikui Hao, Hangui Wu, Meiling Yang, Jianjun Chen, Limin Xi, Weijie Zhao, Jialin Yu, Jiayang Liu, Xiangru Liao, Qingguo Huang

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular characterization of a novel chitinaseBiotechnology for biofuels · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Zhikui HaoInstitute of Applied Biotechnology, Taizhou Vocational & Technical College, Taizhou 318000, China. haozhikui123@126.com.
Hangui WuInstitute of Applied Biotechnology, Taizhou Vocational & Technical College, Taizhou 318000, China. wuhangui@163.com.
Meiling YangInstitute of Applied Biotechnology, Taizhou Vocational & Technical College, Taizhou 318000, China. evoh123@126.com.
Jianjun ChenInstitute of Applied Biotechnology, Taizhou Vocational & Technical College, Taizhou 318000, China. cjjkey@126.com.
Limin XiInstitute of Applied Biotechnology, Taizhou Vocational & Technical College, Taizhou 318000, China. xilm@tzvtc.com.
Weijie ZhaoInstitute of Applied Biotechnology, Taizhou Vocational & Technical College, Taizhou 318000, China. zhaowj79@126.com.
Jialin YuDepartment of Crop and Soil Sciences, University of Georgia, Griffin, GA 30223, USA. yu3577@uga.edu.
Jiayang LiuBioengineering Division, Huanghuai University, Zhumadian 463000, China. jyliu@uga.edu.
Xiangru LiaoThe Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China. liaoxiangru@163.com.
Qingguo HuangDepartment of Crop and Soil Sciences, University of Georgia, Griffin, GA 30223, USA. qhuang@uga.edu.
Taizhou Vocational and Technical College · CNUniversity of Georgia · USHuanghuai University · CNJiangnan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two CHI genes from Chitinolyticbacter meiyuanensis SYBC-H1 encoding chitinases were identified and their protein 3D structures were predicted. According to the amino acid sequence alignment, CHI1 gene encoding 166 aa had a structural domain similar to the GH18 type II chitinase, and CHI2 gene encoding 383 aa had the same catalytic domain as the glycoside hydrolase family 19 chitinase. In this study, CHI2 chitinase were expressed in Escherichia coli BL21 cells, and this protein was purified by ammonium sulfate precipitation, DEAE-cellulose, and Sephadex G-100 chromatography. Optimal activity of CHI2 chitinase occurred at a temperature of 40 °C and a pH of 6.5. The presence of metal ions Fe(3+), Fe(2+), and Zn(2+) inhibited CHI2 chitinase activity, while Na⁺ and K⁺ promoted its activity. Furthermore, the presence of EGTA, EDTA, and β-mercaptoethanol significantly increased the stability of CHI2 chitinase. The CHI2 chitinase was active with p-NP-GlcNAc, with the Km and Vm values of 23.0 µmol/L and 9.1 mM/min at a temperature of 37 °C, respectively. Additionally, the CHI2 chitinase was characterized as an N-acetyl glucosaminidase based on the hydrolysate from chitin. Overall, our results demonstrated CHI2 chitinase with remarkable biochemical properties is suitable for bioconversion of chitin waste.

Indexed as

Bacterial ProteinsChitinasesCloning, MolecularEscherichia coliKineticsModels, MolecularNeisseriaceaePhylogenyProtein StabilityProtein Structure, SecondarySequence Analysis, ProteinSoil MicrobiologyStructural Homology, ProteinBacterial ProteinsChitinases3D structure predictionchitinaseChitinolyticbacter meiyuanensispurificationrecombinantSYBC-H1

Identifiers

PMID27240345
PMCPMC4926359
OpenAlexW2403071662

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.